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A cursory evaluation of a biosample record from GOLD and the same biosample record from bioregistry:
Case 1: GOLD
sample-annotator git:(spatil/pull-insdc-identifiers) ✗ curl -u user_name:password https://gold.jgi.doe.gov/rest/nmdc/biosamples\?biosampleGoldId\=Gb0239939
[{"biosampleGoldId":"Gb0239939","biosampleName":"Banana cropland soil microbial communities from Singapore -
Seedorf71.JP2soil.20","ncbiTaxId":null,"ncbiTaxName":null,"sampleCollectionSite":"Banana cropland
soil","geographicLocation":"Singapore","latitude":1.43492266,"longitude":103.7112946,"ecosystemPathId":4213,"ecosystem
":"Environmental","ecosystemCategory":"Terrestrial","ecosystemType":"Soil","ecosystemSubtype":"Unclassified","specific
cosystem":"Agricultural
land","altitudeInMeters":null,"altitudeInMeters2":null,"dateCollected":null,"depthInMeters":null,"depthInMeters2":null,"descri
ption":"Banana cropland soil microbial communities from Singapore","hostDiseases":
[],"elevationInMeters":19,"elevationInMeters2":null,"geoLocation":"Singapore","habitat":"Banana cropland
soil","hostGender":null,"hostName":null,"hostNcbiTaxid":null,"isoCountry":"Singapore","longhurst":null,"nitrateConcentration
":null,"oxygenConcentration":null,"ph":null,"pressure":null,"salinity":null,"salinityConcentration":null,"sampleBodySite":null,"s
ampleBodySubsite":null,"sampleCollectionTemperature":null,"subsurfaceDepthInMeters":null,"subsurfaceDepthInMeters2":n
ull,"visitNum":null,"mixsPackage":"Standard","envoBroadScale":{"id":"ENVO_01000245","label":"cropland
biome"},"envoLocalScale":{"id":"ENVO_00000119","label":"planted forest"},"envoMedium":
{"id":"ENVO_02000059","label":"surface soil"},"modDate":"2022-04-08","addDate":"2019-09-03","contacts":
[{"name":"Janet Jansson","email":"janet.jansson@pnnl.gov","jgiSsoId":"62","roles":["other"]},{"name":"Antonio David Paez
Espino","email":"adpaezespino@lbl.gov","jgiSsoId":"8722","roles":["other"]},{"name":"Emily
Graham","email":"emily.graham@pnnl.gov)","jgiSsoId":"null","roles":["submitter"]},{"name":"Emily
Graham","email":"emily.graham@pnnl.gov","jgiSsoId":"52018","roles":["other"]},{"name":"Ruonan
Wu","email":"ruonan.wu@pnnl.gov","jgiSsoId":"59483","roles":["other"]},{"name":"Russell
Neches","email":"ryneches@lbl.gov","jgiSsoId":"55080","roles":["other"]}]}]%
See that for biosampleGoldId="Gb0239939", we have sampleCollectionTemperature set to NULL.
Case 2: bioregistry
Follow this link to find the corresponding bioregistry record: https://www.ebi.ac.uk/biosamples/samples/SAMEA7724289
You'll see that there is temperature is set to 32 degree celsius.
What is the reason for this inconsistency between the same records in the two places? Is GOLD not up to date?
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