For REST API-based access to integrate in user’s existing tools: URLs to use for json output with CLI (e.g., using [curl -L 'URL']; use /viewType/txt for text output):
Reactions:
https://bdcw.org/MetGENE/rest/reactions/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/NA/disease/NA/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/reactions/species/hsa/GeneIDType/ENSEMBL/GeneInfoStr/ENSG00000000419/anatomy/NA/disease/NA/phenotype/NA/viewType/json
Metabolites:
https://bdcw.org/MetGENE/rest/metabolites/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/txt
https://bdcw.org/MetGENE/rest/metabolites/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/Blood/disease/NA/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/metabolites/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/Fibroblast+cells/disease/NA/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/metabolites/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/metabolites/species/hsa/GeneIDType/ENSEMBL/GeneInfoStr/ENSG00000000419/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
Studies:
https://bdcw.org/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/Blood/disease/NA/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/Fibroblast+cells/disease/NA/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/Blood/disease/NA/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/Fibroblast+cells/disease/NA/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,ALDOB/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/studies/species/hsa/GeneIDType/UNIPROT/GeneInfoStr/A8K7J7/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
Summary view:
Please note that for the summary view, the filters anatomy, disease and phenotype are required as a placeholder (to maintain the order of the parameter names), but are not used in the actual computation. An important reason for this is that summary results are precomputed for faster processing and the actual use of these filters would have resulted in too many combinations to precompute.
https://bdcw.org/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/NA/disease/NA/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/NA/disease/NA/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/Blood/disease/NA/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/Fibroblast+cells/disease/NA/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/PNPLA3/anatomy/NA/disease/NA/phenotype/NA/viewType/json
https://bdcw.org/MetGENE/rest/summary/species/hsa/GeneIDType/UNIPROT/GeneInfoStr/A8K7J7/anatomy/NA/disease/NA/phenotype/NA/viewType/json
Please use __ (double underscore) or comma (,) to specify more than one gene, as in the string HK1__PNPLA3 or HK1,RPE. For SYMBOL like IDs, the user may specify SYMBOL_OR_ALIAS for GeneIDType, so that, for gene ID conversion, the term will be first searched in SYMBOL and if not found then it will be searched in ALIAS.
Examples of (non-REST) API URL for a summary page:
Single gene case (Default tab view): Either specify both Gene Symbol and Gene ID (ENTREZ), or specify ENSEMBL ID.
https://bdcw.org/MetGENE/mgSummary.php?species=hsa&ENSEMBL=ENSG00000000419&viewType=all
https://bdcw.org/MetGENE/mgSummary.php?species=hsa&GeneSym=ALDOB&GeneID=229
Multiple genes case:
https://bdcw.org/MetGENE/mgSummary.php?species=hsa&GeneSym=RPE__ALDOB__GPI&GeneID=6120__229__2821
Test on sc-cfdewebdev.sdsc.edu (intended for internal use) For REST API-based access to integrate in user’s existing tools: URLs to use for json output with CLI (e.g., using [curl -L 'URL']; use /viewType/txt for text output):
Reactions:
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/reactions/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/NA/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/reactions/species/hsa/GeneIDType/ENSEMBL/GeneInfoStr/ENSG00000000419/anatomy/NA/disease/NA/phenotype/NA/viewType/json
Metabolites:
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/metabolites/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/txt
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/metabolites/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/Blood/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/metabolites/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/Fibroblast+cells/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/metabolites/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/metabolites/species/hsa/GeneIDType/ENSEMBL/GeneInfoStr/ENSG00000000419/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
Studies:
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/Blood/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/Fibroblast+cells/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/Blood/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/Fibroblast+cells/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,ALDOB/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/studies/species/hsa/GeneIDType/UNIPROT/GeneInfoStr/A8K7J7/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
Summary view:
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/NA/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/NA/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/Blood/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/Fibroblast+cells/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/PNPLA3/anatomy/NA/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/MetGENE/rest/summary/species/hsa/GeneIDType/UNIPROT/GeneInfoStr/A8K7J7/anatomy/NA/disease/NA/phenotype/NA/viewType/json
Please use __ (double underscore) or comma (,) to specify more than one gene, as in the string HK1__PNPLA3 or HK1,RPE. For SYMBOL like IDs, the user may specify SYMBOL_OR_ALIAS for GeneIDType, so that, for gene ID conversion, the term will be first searched in SYMBOL and if not found then it will be searched in ALIAS.
Examples of (non-REST) API URL for a summary page:
Single gene case (Default tab view): Either specify both Gene Symbol and Gene ID (ENTREZ), or specify ENSEMBL ID.
https://sc-cfdewebdev.sdsc.edu/MetGENE/mgSummary.php?species=hsa&ENSEMBL=ENSG00000000419&viewType=all
https://sc-cfdewebdev.sdsc.edu/MetGENE/mgSummary.php?species=hsa&GeneSym=ALDOB&GeneID=229
Multiple genes case:
https://sc-cfdewebdev.sdsc.edu/MetGENE/mgSummary.php?species=hsa&GeneSym=RPE__ALDOB__GPI&GeneID=6120__229__2821
Test on sc-cfdewebdev.sdsc.edu from dev/ (intended for internal use) For REST API-based access to integrate in user’s existing tools: URLs to use for json output with CLI (e.g., using [curl -L 'URL']; use /viewType/txt for text output):
Reactions:
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/reactions/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/NA/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/reactions/species/hsa/GeneIDType/ENSEMBL/GeneInfoStr/ENSG00000000419/anatomy/NA/disease/NA/phenotype/NA/viewType/json
Metabolites:
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/metabolites/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/txt
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/metabolites/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/Blood/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/metabolites/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/Fibroblast+cells/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/metabolites/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/metabolites/species/hsa/GeneIDType/ENSEMBL/GeneInfoStr/ENSG00000000419/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
Studies:
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/Blood/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/Fibroblast+cells/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/Blood/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/Fibroblast+cells/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/studies/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,ALDOB/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/studies/species/hsa/GeneIDType/UNIPROT/GeneInfoStr/A8K7J7/anatomy/NA/disease/Diabetes/phenotype/NA/viewType/json
Summary view:
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1/anatomy/NA/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/NA/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/Blood/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/HK1,RPE/anatomy/Fibroblast+cells/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/summary/species/hsa/GeneIDType/SYMBOL/GeneInfoStr/PNPLA3/anatomy/NA/disease/NA/phenotype/NA/viewType/json
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/rest/summary/species/hsa/GeneIDType/UNIPROT/GeneInfoStr/A8K7J7/anatomy/NA/disease/NA/phenotype/NA/viewType/json
Please use __ (double underscore) or comma (,) to specify more than one gene, as in the string HK1__PNPLA3 or HK1,RPE. For SYMBOL like IDs, the user may specify SYMBOL_OR_ALIAS for GeneIDType, so that, for gene ID conversion, the term will be first searched in SYMBOL and if not found then it will be searched in ALIAS.
Examples of (non-REST) API URL for a summary page:
Single gene case (Default tab view): Either specify both Gene Symbol and Gene ID (ENTREZ), or specify ENSEMBL ID.
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/mgSummary.php?species=hsa&ENSEMBL=ENSG00000000419&viewType=all
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/mgSummary.php?species=hsa&GeneSym=ALDOB&GeneID=229
Multiple genes case:
https://sc-cfdewebdev.sdsc.edu/dev/MetGENE/mgSummary.php?species=hsa&GeneSym=RPE__ALDOB__GPI&GeneID=6120__229__2821