rna_seq/cluster.yaml at main · maxsonBraunLab/rna_seq · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
__default__:
  time: "03:00:00"
  partition: "batch"
  job-name: "{rule}"
  output: "jobs/{rule}/{rule}_%j.out"
  error: "jobs/{rule}/{rule}_%j.err"
  cpus-per-task: 4
  mem: 8G
bigwig:
  cpus-per-task: 4
  mem: 4G
compile_counts:
  cpus-per-task: 1
  mem: 2G
deseq2_group:
  cpus-per-task: 1
  mem: 4G
deseq2_norm:
  cpus-per-task: 1
  mem: 4G
deseq2_pairwise:
  cpus-per-task: 1
  mem: 4G
fastp:
  cpus-per-task: 4
  mem: 4G
fastq_screen:
  cpus-per-task: 2
  mem: 4G
fastqc:
  cpus-per-task: 1
  mem: 4G
filter_counts:
  cpus-per-task: 1
  mem: 2G
index:
  cpus-per-task: 2
  mem: 2G
multiqc:
  cpus-per-task: 1
  mem: 2G
preseq:
  cpus-per-task: 1
  mem: 4G
preseq_lcextrap:
  cpus-per-task: 1
  mem: 4G
STAR:
  job-name: STAR
  error: jobs/STAR/{wildcards.sample}.err
  output: jobs/STAR/{wildcards.sample}.out
  cpus-per-task: 8
  mem: 48G