packages.bib

@Manual{R-AICcmodavg,
  title = {AICcmodavg: Model Selection and Multimodel Inference Based on (Q)AIC(c)},
  author = {Marc J. Mazerolle},
  year = {2025},
  note = {R package version 2.3-4},
  url = {https://CRAN.R-project.org/package=AICcmodavg},
  doi = {10.32614/CRAN.package.AICcmodavg},
}

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2025},
  url = {https://www.R-project.org/},
}

@Manual{R-broom,
  title = {broom: Convert Statistical Objects into Tidy Tibbles},
  author = {David Robinson and Alex Hayes and Simon Couch},
  year = {2025},
  note = {R package version 1.0.10},
  url = {https://broom.tidymodels.org/},
}

@Manual{R-car,
  title = {car: Companion to Applied Regression},
  author = {John Fox and Sanford Weisberg and Brad Price},
  year = {2024},
  note = {R package version 3.1-3},
  url = {https://r-forge.r-project.org/projects/car/},
}

@Manual{R-caret,
  title = {caret: Classification and Regression Training},
  author = {Max Kuhn},
  year = {2024},
  note = {R package version 7.0-1},
  url = {https://github.com/topepo/caret/},
}

@Manual{R-caTools,
  title = {caTools: Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc},
  author = {Jarek Tuszynski},
  year = {2024},
  note = {R package version 1.18.3},
  url = {https://CRAN.R-project.org/package=caTools},
  doi = {10.32614/CRAN.package.caTools},
}

@Manual{R-cowsay,
  title = {cowsay: Messages, Warnings, Strings with Ascii Animals},
  author = {Scott Chamberlain and Amanda Dobbyn},
  year = {2025},
  note = {R package version 1.2.0},
  url = {https://github.com/sckott/cowsay},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
  year = {2026},
  note = {R package version 1.2.0},
  url = {https://dplyr.tidyverse.org},
}

@Manual{R-fortunes,
  title = {fortunes: R Fortunes},
  author = {Achim Zeileis and the R community. Contributions (fortunes and/or code) by Torsten Hothorn and Peter Dalgaard and Uwe Ligges and Kevin Wright and Martin Maechler and Kjetil Brinchmann Halvorsen and Kurt Hornik and Duncan Murdoch and Andy Bunn and Ray Brownrigg and Roger Bivand and Spencer Graves and Jim Lemon and Christian Kleiber and David L. Reiner and Berton Gunter and Roger Koenker and Charles Berry and Marc Schwartz and Michael Dewey and Ben Bolker and Peter Dunn and Sarah Goslee and Simon Blomberg and Bill Venables and Roland Rau and Thomas Petzoldt and Rolf Turner and Mark Leeds and Emmanuel Charpentier and Chris Evans and Paolo Sonego and Peter Ehlers and Detlef Steuer and Tal Galili and Greg Snow and Brian D. Ripley and Michael Sumner and David Winsemius and Liviu Andronic and Brian Diggs and Matthieu Stigler and Michael Friendly and Dirk Eddelbuettel and Richard M. Heiberger and Patrick Burns and Dieter Menne and Andrie {de Vries} and Barry Rowlingson and Renaud Lancelot and R. Michael Weylandt and Jon Olav Skoien and Francois Morneau and Antony Unwin and Joshua Wiley and Terry Therneau and Bryan Hanson and Henrik Singmann and Eduard Szoecs and Gregor Passolt and John C. Nash.},
  year = {2016},
  note = {R package version 1.5-4},
  url = {https://CRAN.R-project.org/package=fortunes},
  doi = {10.32614/CRAN.package.fortunes},
}

@Manual{R-GGally,
  title = {GGally: Extension to ggplot2},
  author = {Barret Schloerke and Di Cook and Joseph Larmarange and Francois Briatte and Moritz Marbach and Edwin Thoen and Amos Elberg and Jason Crowley},
  year = {2025},
  note = {R package version 2.4.0},
  url = {https://ggobi.github.io/ggally/},
}

@Manual{R-ggformula,
  title = {ggformula: Formula Interface to the Grammar of Graphics},
  author = {Daniel Kaplan and Randall Pruim},
  year = {2025},
  note = {R package version 0.12.2},
  url = {https://github.com/ProjectMOSAIC/ggformula},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington and Teun {van den Brand}},
  year = {2025},
  note = {R package version 4.0.0},
  url = {https://ggplot2.tidyverse.org},
}

@Manual{R-ggthemes,
  title = {ggthemes: Extra Themes, Scales and Geoms for ggplot2},
  author = {Jeffrey B. Arnold},
  year = {2024},
  note = {R package version 5.1.0},
  url = {https://jrnold.github.io/ggthemes/},
}

@Manual{R-gmodels,
  title = {gmodels: Various R Programming Tools for Model Fitting},
  author = {Gregory R. Warnes and Ben Bolker and Thomas Lumley and Randall C. Johnson and Nitin Jain and Mark Schwartz and Jim Rogers},
  year = {2024},
  note = {R package version 2.19.1},
  url = {https://github.com/r-gregmisc/gmodels},
}

@Manual{R-ISLR2,
  title = {ISLR2: Introduction to Statistical Learning, Second Edition},
  author = {Gareth James and Daniela Witten and Trevor Hastie and Rob Tibshirani},
  year = {2022},
  note = {R package version 1.3-2},
  url = {https://www.statlearning.com},
}

@Manual{R-janitor,
  title = {janitor: Simple Tools for Examining and Cleaning Dirty Data},
  author = {Sam Firke},
  year = {2024},
  note = {R package version 2.2.1},
  url = {https://github.com/sfirke/janitor},
}

@Manual{R-kableExtra,
  title = {kableExtra: Construct Complex Table with kable and Pipe Syntax},
  author = {Hao Zhu},
  year = {2024},
  note = {R package version 1.4.0},
  url = {http://haozhu233.github.io/kableExtra/},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2025},
  note = {R package version 1.50},
  url = {https://yihui.org/knitr/},
}

@Manual{R-lmtest,
  title = {lmtest: Testing Linear Regression Models},
  author = {Torsten Hothorn and Achim Zeileis and Richard W. Farebrother and Clint Cummins},
  year = {2022},
  note = {R package version 0.9-40},
  url = {https://CRAN.R-project.org/package=lmtest},
  doi = {10.32614/CRAN.package.lmtest},
}

@Manual{R-magrittr,
  title = {magrittr: A Forward-Pipe Operator for R},
  author = {Stefan Milton Bache and Hadley Wickham},
  year = {2025},
  note = {R package version 2.0.4},
  url = {https://magrittr.tidyverse.org},
}

@Manual{R-mosaic,
  title = {mosaic: Project MOSAIC Statistics and Mathematics Teaching Utilities},
  author = {Randall Pruim and Daniel T. Kaplan and Nicholas J. Horton},
  year = {2025},
  note = {R package version 1.9.2},
  url = {https://github.com/ProjectMOSAIC/mosaic},
}

@Manual{R-nycOpenData,
  title = {nycOpenData: Convenient Access to NYC Open Data API Endpoints},
  author = {Christian Martinez},
  year = {2026},
  note = {R package version 0.1.6},
  url = {https://martinezc1.github.io/nycOpenData/},
}

@Manual{R-palmerpenguins,
  title = {palmerpenguins: Palmer Archipelago (Antarctica) Penguin Data},
  author = {Allison Horst and Alison Hill and Kristen Gorman},
  year = {2022},
  note = {R package version 0.1.1},
  url = {https://allisonhorst.github.io/palmerpenguins/},
}

@Manual{R-patchwork,
  title = {patchwork: The Composer of Plots},
  author = {Thomas Lin Pedersen},
  year = {2025},
  note = {R package version 1.3.2},
  url = {https://patchwork.data-imaginist.com},
}

@Manual{R-pheatmap,
  title = {pheatmap: Pretty Heatmaps},
  author = {Raivo Kolde},
  year = {2025},
  note = {R package version 1.0.13},
  url = {https://CRAN.R-project.org/package=pheatmap},
  doi = {10.32614/CRAN.package.pheatmap},
}

@Manual{R-plotly,
  title = {plotly: Create Interactive Web Graphics via plotly.js},
  author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
  year = {2025},
  note = {R package version 4.11.0},
  url = {https://plotly-r.com},
}

@Manual{R-ppcor,
  title = {ppcor: Partial and Semi-Partial (Part) Correlation},
  author = {Seongho Kim},
  year = {2015},
  note = {R package version 1.1},
  url = {https://CRAN.R-project.org/package=ppcor},
  doi = {10.32614/CRAN.package.ppcor},
}

@Manual{R-pROC,
  title = {pROC: Display and Analyze ROC Curves},
  author = {Xavier Robin and Natacha Turck and Alexandre Hainard and Natalia Tiberti and Frédérique Lisacek and Jean-Charles Sanchez and Markus Müller},
  year = {2025},
  note = {R package version 1.19.0.1},
  url = {https://xrobin.github.io/pROC/},
}

@Manual{R-pscl,
  title = {pscl: Political Science Computational Laboratory},
  author = {Simon Jackman},
  year = {2024},
  note = {R package version 1.5.9},
  url = {https://github.com/atahk/pscl},
}

@Manual{R-quartets,
  title = {quartets: Datasets to Help Teach Statistics},
  author = {Lucy {D'Agostino McGowan}},
  year = {2023},
  note = {R package version 0.1.1},
  url = {https://github.com/r-causal/quartets},
}

@Manual{R-rcompanion,
  title = {rcompanion: Functions to Support Extension Education Program Evaluation},
  author = {Salvatore Mangiafico},
  year = {2025},
  note = {R package version 2.5.0},
  url = {https://CRAN.R-project.org/package=rcompanion},
}

@Manual{R-readxl,
  title = {readxl: Read Excel Files},
  author = {Hadley Wickham and Jennifer Bryan},
  year = {2025},
  note = {R package version 1.4.5},
  url = {https://readxl.tidyverse.org},
}

@Manual{R-reproresearchR,
  title = {reproresearchR: Companion Package for Reproducible Research Using R},
  author = {Christian Martinez},
  year = {2026},
  note = {R package version 0.1.1},
  url = {https://martinezc1-reproducible-research-using-r.share.connect.posit.cloud/},
}

@Manual{R-skimr,
  title = {skimr: Compact and Flexible Summaries of Data},
  author = {Elin Waring and Michael Quinn and Amelia McNamara and Eduardo {Arino de la Rubia} and Hao Zhu and Shannon Ellis},
  year = {2025},
  note = {R package version 2.2.1},
  url = {https://docs.ropensci.org/skimr/},
}

@Manual{R-supernova,
  title = {supernova: Judd, McClelland, \& Ryan Formatting for ANOVA Output},
  author = {Adam Blake and Jeff Chrabaszcz and Ji Son and Jim Stigler},
  year = {2024},
  note = {R package version 3.0.0},
  url = {https://github.com/UCLATALL/supernova},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2026},
  note = {R package version 3.3.1},
  url = {https://tibble.tidyverse.org/},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the Tidyverse},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 2.0.0},
  url = {https://tidyverse.tidyverse.org},
}

@Manual{R-webshot2,
  title = {webshot2: Take Screenshots of Web Pages},
  author = {Winston Chang},
  year = {2025},
  note = {R package version 0.1.2},
  url = {https://rstudio.github.io/webshot2/},
}

@Book{car2019,
  title = {An {R} Companion to Applied Regression},
  edition = {Third},
  author = {John Fox and Sanford Weisberg},
  year = {2019},
  publisher = {Sage},
  address = {Thousand Oaks {CA}},
  url = {https://www.john-fox.ca/Companion/},
}

@Article{caret2008,
  title = {Building Predictive Models in R Using the caret Package},
  volume = {28},
  url = {https://www.jstatsoft.org/index.php/jss/article/view/v028i05},
  doi = {10.18637/jss.v028.i05},
  number = {5},
  journal = {Journal of Statistical Software},
  author = {{Kuhn} and {Max}},
  year = {2008},
  pages = {1–26},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
}

@Article{lmtest2002,
  title = {Diagnostic Checking in Regression Relationships},
  author = {Achim Zeileis and Torsten Hothorn},
  journal = {R News},
  year = {2002},
  volume = {2},
  number = {3},
  pages = {7--10},
  url = {https://CRAN.R-project.org/doc/Rnews/},
}

@Article{mosaic2017,
  author = {Randall Pruim and Daniel T Kaplan and Nicholas J Horton},
  title = {The mosaic Package: Helping Students to 'Think with Data' Using R},
  journal = {The R Journal},
  volume = {9},
  number = {1},
  pages = {77--102},
  year = {2017},
  url = {https://journal.r-project.org/archive/2017/RJ-2017-024/index.html},
}

@Book{plotly2020,
  author = {Carson Sievert},
  title = {Interactive Web-Based Data Visualization with R, plotly, and shiny},
  publisher = {Chapman and Hall/CRC},
  year = {2020},
  isbn = {9781138331457},
  url = {https://plotly-r.com},
}

@Article{pROC2011,
  title = {pROC: an open-source package for R and S+ to analyze and compare ROC curves},
  author = {Xavier Robin and Natacha Turck and Alexandre Hainard and Natalia Tiberti and Frédérique Lisacek and Jean-Charles Sanchez and Markus Müller},
  year = {2011},
  journal = {BMC Bioinformatics},
  volume = {12},
  pages = {77},
}

@Article{pscl2008,
  title = {Regression Models for Count Data in {R}},
  author = {Achim Zeileis and Christian Kleiber and Simon Jackman},
  journal = {Journal of Statistical Software},
  year = {2008},
  volume = {27},
  number = {8},
  url = {https://www.jstatsoft.org/v27/i08/},
}

@Manual{quartets2023,
  title = {quartets: Datasets to help teach statistics},
  author = {Lucy {D'Agostino McGowan}},
  year = {2023},
  url = {https://r-causal.github.io/quartets/},
}

@Manual{rcompanion2025,
  title = {{rcompanion}: Functions to Support Extension Education Program Evaluation},
  author = {Salvatore S. Mangiafico},
  organization = {Rutgers Cooperative Extension},
  address = {New Brunswick, New Jersey},
  note = {version 2.5.0},
  year = {2025},
  url = {https://CRAN.R-project.org/package=rcompanion/},
}

@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}