You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
<dt><spanclass="memberNameLink"><ahref="org/magicdgs/readtools/tools/trimming/TrimReadsTrimmerPluginArgumentCollection.html#disabledTrimmers">disabledTrimmers</a></span> - Variable in class org.magicdgs.readtools.tools.trimming.<ahref="org/magicdgs/readtools/tools/trimming/TrimReadsTrimmerPluginArgumentCollection.html" title="class in org.magicdgs.readtools.tools.trimming">TrimReadsTrimmerPluginArgumentCollection</a></dt>
523
523
<dd> </dd>
524
+
<dt><spanclass="memberNameLink"><ahref="org/magicdgs/readtools/tools/distmap/DownloadDistmapResult.html#disableSuccessCheck">disableSuccessCheck</a></span> - Variable in class org.magicdgs.readtools.tools.distmap.<ahref="org/magicdgs/readtools/tools/distmap/DownloadDistmapResult.html" title="class in org.magicdgs.readtools.tools.distmap">DownloadDistmapResult</a></dt>
525
+
<dd> </dd>
524
526
<dt><spanclass="memberNameLink"><ahref="org/magicdgs/readtools/metrics/barcodes/BarcodeStat.html#DISCARDED">DISCARDED</a></span> - Variable in class org.magicdgs.readtools.metrics.barcodes.<ahref="org/magicdgs/readtools/metrics/barcodes/BarcodeStat.html" title="class in org.magicdgs.readtools.metrics.barcodes">BarcodeStat</a></dt>
525
527
<dd>
526
528
<divclass="block">The number of barcodes discarded by the maximum number of mismatches</div>
@@ -1642,10 +1644,6 @@ <h2 class="title">O</h2>
1642
1644
<dd>
1643
1645
<divclass="block">Open a new FastqReader from a path.</div>
1644
1646
</dd>
1645
-
<dt><spanclass="memberNameLink"><ahref="org/magicdgs/readtools/utils/read/ReadReaderFactory.html#openFastqReader-java.io.File-">openFastqReader(File)</a></span> - Method in class org.magicdgs.readtools.utils.read.<ahref="org/magicdgs/readtools/utils/read/ReadReaderFactory.html" title="class in org.magicdgs.readtools.utils.read">ReadReaderFactory</a></dt>
1646
-
<dd>
1647
-
<divclass="block">Open a new FastqReaderr from a file.</div>
1648
-
</dd>
1649
1647
<dt><spanclass="memberNameLink"><ahref="org/magicdgs/readtools/utils/read/ReadWriterFactory.html#openFastqWriter-java.nio.file.Path-">openFastqWriter(Path)</a></span> - Method in class org.magicdgs.readtools.utils.read.<ahref="org/magicdgs/readtools/utils/read/ReadWriterFactory.html" title="class in org.magicdgs.readtools.utils.read">ReadWriterFactory</a></dt>
1650
1648
<dd>
1651
1649
<divclass="block">Open a new FASTQ writer from a Path.</div>
@@ -1658,14 +1656,6 @@ <h2 class="title">O</h2>
1658
1656
<dd>
1659
1657
<divclass="block">Open a new SAMReader from a path.</div>
1660
1658
</dd>
1661
-
<dt><spanclass="memberNameLink"><ahref="org/magicdgs/readtools/utils/read/ReadReaderFactory.html#openSamReader-java.io.File-">openSamReader(File)</a></span> - Method in class org.magicdgs.readtools.utils.read.<ahref="org/magicdgs/readtools/utils/read/ReadReaderFactory.html" title="class in org.magicdgs.readtools.utils.read">ReadReaderFactory</a></dt>
1662
-
<dd>
1663
-
<divclass="block">Open a new SAMReader from a file.</div>
1664
-
</dd>
1665
-
<dt><spanclass="memberNameLink"><ahref="org/magicdgs/readtools/utils/read/ReadReaderFactory.html#openSamReader-htsjdk.samtools.SamInputResource-">openSamReader(SamInputResource)</a></span> - Method in class org.magicdgs.readtools.utils.read.<ahref="org/magicdgs/readtools/utils/read/ReadReaderFactory.html" title="class in org.magicdgs.readtools.utils.read">ReadReaderFactory</a></dt>
1666
-
<dd>
1667
-
<divclass="block">Open a new SAMReader from a resource.</div>
1668
-
</dd>
1669
1659
<dt><spanclass="memberNameLink"><ahref="org/magicdgs/readtools/utils/read/ReadWriterFactory.html#openSAMWriter-htsjdk.samtools.SAMFileHeader-boolean-java.lang.String-">openSAMWriter(SAMFileHeader, boolean, String)</a></span> - Method in class org.magicdgs.readtools.utils.read.<ahref="org/magicdgs/readtools/utils/read/ReadWriterFactory.html" title="class in org.magicdgs.readtools.utils.read">ReadWriterFactory</a></dt>
1670
1660
<dd>
1671
1661
<divclass="block">Open a new SAM/BAM/CRAM writer from a String path.</div>
0 commit comments