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openeddy 0.0.0.9009

  • improved folder structure introduced by make_paths() which supersedes structure_eddy()
  • added eddy_data object that is now used in many examples instead of generated data
  • rework of strptime_eddy() and its automated time interval recognition with more informative error messages
  • improved automated time interval recognition was included in merge_eddy() with more informative examples
  • added support for open-path LI7500 gas analyzer: "LI7500" filter in extract_QC()
  • added support for a change of anemometer coordinate rotation type in extract_QC()
  • added support for a change of averaging period extent in extract_QC()
  • added support for a change of gas analyzer type in interdep()
  • added label_periods() to annotate above changes in rotation, averaging periods or analyzer type
  • extract_coded() was vectorized (performance improvement)
  • prefer global or potential radiation over photosynthetically active radiation in functions taking incoming light intensity as input: despikeLF(), plot_eddy(), exclude(), check_manually()
  • support qc_flag = NULL in despikeLF() for cases when quality control is not available
  • added support for missing variables in plot_eddy() with examples
  • removed data objects relevant only to EC workflow (precheck_vars, essential_vars_QC) - moved to EC workflow content
  • added pattern argument in read_EddyPro() and read_MeteoDBS() to allow usage of regular expression to select files from a folder
  • bug fix: weekly plots in plot_eddy() can now start from any day (no additional blank plot or blank days introduced)
  • markdown = TRUE in roxygen documentation was enabled and reformatting of documentation to Markdown style was applied
  • adopted testthat 3e (third edition) and extensive set of unit tests was added

openeddy 0.0.0.9008

  • precheck_vars object included
  • combine_docu() was removed from openeddy and moved to workflow utilities
  • fix bug: NA instead of 9 in extract_coded() for "attangle" and "nonsteady"
  • check_manually() now displays also two additional meteo variables (useful when deciding about outliers)
  • apply_QC() was added: removes flux values with QC flag = 2
  • agg_fun() added: you can use arbitrary function for data aggregations (e.g. extracting daily temperature minimum, maximum, etc.)
  • added filter for LI7200 and LI7500 signal strength in extract_QC()
  • added humidity filter in extract_QC()
  • fix bug: correct logic of messages and order of names in choose_avail()
  • add essential_vars_QC object
  • added flag_periods: you can define periods that should be flagged (e.g. due to maintenance)
  • bug fix in check_manually(): this previously led to incorrect ordering of columns in output files (now in user defined order)
  • bug fix in the computation of spatio-temporal sampling coverage: area integration is now correct so values will slightly differ from previous version
  • report saving file in check_manually()
  • bug fix: compute correct area under curve in calc_spti_cov()
  • flag_runs() amended for better performance
  • bug fix: ex() was dropping class to list in some cases
  • ggplot_stats() bugfix: stop on too many repeated values
  • bug fix: QC issues in remap_vars()

openeddy 0.0.0.9007

  • add apply_QC()
  • extend capabilities of extract_coded()
  • generalize extraction of filters and add new filters using extract_QC()
  • implement soft flags in apply_thr() for 'between' and 'outside'
  • add circular scale support (angles) to apply_thr()
  • generalize agg_mean() to agg_fun() supporting any function for aggregation

openeddy 0.0.0.9006

  • 'shift.by' included in check_manually()
  • allow missing precipitation in plot_eddy() and include examples
  • allow to set maximum range of automatically computed y-axis limits with 'ylim' in plot_eddy()
  • add 'ylim' to ggplot_stats() with option to zoom on uncertainty band
  • support two auxiliary vars in exclude() and accordingly in check_manually()

openeddy 0.0.0.9005

  • added read_MeteoDBS(), read_EddyPro(), combine_docu(), strip_suffix(), choose_avail()
  • added check_manually() that extends exclude() capabilities
  • added plot_precheck() and plot_hh() for plotting of half-hourly data
  • aggregation functions report 'days' column, i.e. amount of days in the aggregation period
  • added barplot_agg() for plotting of aggregated data
  • added ggplot_stats() for exploring wind direction dependencies in data
  • added round_df() for rounding double types across data frame
  • produce integers with extract_coded()
  • strptime_eddy() output is forced to be of type integer to escape rounding with round_df()
  • support aggregation of evapotranspiration including unit conversion

openeddy 0.0.0.9004

  • git versioning system adopted for openeddy
  • all changes can be now tracked through the git history
  • time format support for REddyProc online tool
  • assignment of attributes varnames and units was simplified
  • extract_QC(): separated wresid settings for double and planar fit
  • implemented flag = "between" (and "outside") in apply_thr()
  • flag_runs(), structure_eddy(), remap_vars(), ex(), merge_eddy() and correct() included
  • changed default values for despikeLF() and strptime_eddy()
  • despikeLF arg 'flux' renamed to 'var'; iterative despiking implemented
  • NAs in plot_eddy test arg shown as flag 2
  • function exclude() implemented - interactive manual checking
  • automated recognition of additive filters and NA handling in combn_QC() and summary_QC()
  • custom plot panels using modules in plot_eddy()
  • aggregation functions added
  • allow gaps in strptime_eddy()
  • add functions to compute Griebel et al. (2020) budgets with uncertainty
  • add function for assessment of spatio_temporal sampling coverage

openeddy 0.0.0.9003

  • the code is identical with eddyczechr 0.0.0.9003
  • updated package description and requirements