I'm certain that this isn't a hardware issue because I've encountered the same problem on different computers.
================================================================================
dfnTrans Starting
================================================================================
Attempting to Copy /home/mjc/PTDFN_control.dat
Checking that all files required for dfnTrans are in the current directory
--> Current Working Directory: /home/mjc/output
--> dfnTrans is running from: PTDFN_control.dat
--> Checking DFNTrans Parameters
--> All files required for dfnTrans have been found in current directory
--> Checking Initial Conditions
--> Checking Initial Conditions Complete
The input parameters are read from PTDFN_control.dat control file.
~~~ Program: DFNWorks / DFNTrans V1.0, C code, Linux ~~~~~~~~~~~~~
~~~~~~~~~~~~ April 1st, 2015. LA-CC-14-091 ~~~~~~~~~~~~~~~~~~~~~~~~~
This program was prepared at Los Alamos National Laboratory (LANL),
Earth and Environmental Sciences Division, Computational Earth
Science Group (EES-16), Subsurface Flow and Transport Team.
All rights in the program are reserved by the DOE and LANL.
Permission is granted to the public to copy and use this software
without charge, provided that this Notice and any statement of
authorship are reproduced on all copies. Neither the U.S. Government
nor LANS makes any warranty, express or implied, or assumes
any liability or responsibility for the use of this software.
Last update Apr. 1st, 2015, by N. Makedonska (nataliia@lanl.gov)
PROGRAM STARTS. current time: Tue Feb 18 10:06:32 2025
Particles velocities are calculated in [m/seconds].
All output files will be written in traj/
---------------------GRID DATA READING--------------------------
OPEN AND READ FILE: params.txt
Number of fractures in the domain = 319
OPEN AND READ AVS FILE: full_mesh.inp
Total number of nodes: 1329494, Total number of elements (triangles): 2732416
OPEN AND READ STOR FILE: full_mesh.stor
Total number of edges in Voronoy polygons = 9453534, total number of nodes = 1329494
Memory allocation is done successfully
OPEN AND READ FILE: poly_info.dat
OPEN AND READ FILE: full_mesh.inp
OPEN AND READ FILE: full_mesh.stor
OPEN AND READ FILE: aperture.dat
----------------FLOW SOLUTION DATA READING--------------------
PFLOTRAN: OPEN AND READ FILE: darcyvel.dat
PFLOTRAN: OPEN AND READ FILE: cellinfo.dat
Reading pressure
MAX pressure 1.90926600e+01 [MPa]; MIN pressure -5.54310100e+00 [MPa]
Data Reading is Done
---------------------BOUNDARY CONDITIONS----------------------
OPEN AND READ FILE: allboundaries.zone
Read the number and indices of nodes defined in flow in and flow out zones
Number of nodes 2542 in flow-in zone.
Number of nodes 2608 in flow-out zone.
Total in-flow volumetric flux = 2.43004e-02 [m^3/s]
Total out-flow volumetric flux = -2.39869e-02 [m^3/s]
GRID CHECK starts
GRID CHECK is done
Converting 3d nodes coordinates to 2d xy parallel plane
----------------VELOCITY RECONSTRUCTION-----------------------
Darcy's velocities reconstruction
Velocities on nodes are calculated
Output flow field: Darcy velocities on nodes in 3D
------------------PARTICLE TRACKING---------------------------
Fracture Intersection Rule: Complete Mixing
All output trajectory files will be written in traj/trajectories/
Note: if the directory exists all the files in it will be replaced.
Number of fractures in the in-flow boundary zone: 51
Particle Initial position option: init_eqd with init_npart: 40
Total Number of Particles: 2040
Number of Fractures: 51
Total Length of Fractures on Boundary: 202.448874 m
Particles will be placed with a spacing of 0.099240 [m]
Seeding 2013 particles
There are 2000000 time steps in the current run
Starting Main Loop on Particles
Segmentation fault (core dumped)
--> ERROR: dfnTrans did not complete
I'm certain that this isn't a hardware issue because I've encountered the same problem on different computers.
================================================================================
dfnTrans Starting
================================================================================
Attempting to Copy /home/mjc/PTDFN_control.dat
Checking that all files required for dfnTrans are in the current directory
--> Current Working Directory: /home/mjc/output
--> dfnTrans is running from: PTDFN_control.dat
--> Checking DFNTrans Parameters
--> All files required for dfnTrans have been found in current directory
--> Checking Initial Conditions
--> Checking Initial Conditions Complete
The input parameters are read from PTDFN_control.dat control file.
PROGRAM STARTS. current time: Tue Feb 18 10:06:32 2025
Particles velocities are calculated in [m/seconds].
All output files will be written in traj/
---------------------GRID DATA READING--------------------------
OPEN AND READ FILE: params.txt
Number of fractures in the domain = 319
OPEN AND READ AVS FILE: full_mesh.inp
Total number of nodes: 1329494, Total number of elements (triangles): 2732416
OPEN AND READ STOR FILE: full_mesh.stor
Total number of edges in Voronoy polygons = 9453534, total number of nodes = 1329494
Memory allocation is done successfully
OPEN AND READ FILE: poly_info.dat
OPEN AND READ FILE: full_mesh.inp
OPEN AND READ FILE: full_mesh.stor
OPEN AND READ FILE: aperture.dat
----------------FLOW SOLUTION DATA READING--------------------
PFLOTRAN: OPEN AND READ FILE: darcyvel.dat
PFLOTRAN: OPEN AND READ FILE: cellinfo.dat
Reading pressure
MAX pressure 1.90926600e+01 [MPa]; MIN pressure -5.54310100e+00 [MPa]
Data Reading is Done
---------------------BOUNDARY CONDITIONS----------------------
OPEN AND READ FILE: allboundaries.zone
Read the number and indices of nodes defined in flow in and flow out zones
Number of nodes 2542 in flow-in zone.
Number of nodes 2608 in flow-out zone.
Total in-flow volumetric flux = 2.43004e-02 [m^3/s]
Total out-flow volumetric flux = -2.39869e-02 [m^3/s]
GRID CHECK starts
GRID CHECK is done
Converting 3d nodes coordinates to 2d xy parallel plane
----------------VELOCITY RECONSTRUCTION-----------------------
Darcy's velocities reconstruction
Velocities on nodes are calculated
Output flow field: Darcy velocities on nodes in 3D
------------------PARTICLE TRACKING---------------------------
Fracture Intersection Rule: Complete Mixing
All output trajectory files will be written in traj/trajectories/
Note: if the directory exists all the files in it will be replaced.
Number of fractures in the in-flow boundary zone: 51
Particle Initial position option: init_eqd with init_npart: 40
Total Number of Particles: 2040
Number of Fractures: 51
Total Length of Fractures on Boundary: 202.448874 m
Particles will be placed with a spacing of 0.099240 [m]
Seeding 2013 particles
There are 2000000 time steps in the current run
Starting Main Loop on Particles
Segmentation fault (core dumped)
--> ERROR: dfnTrans did not complete