CiriQuant Python Version 2.7 Error

[stefanerb89]

I got this error:

-1 SID16111_S6_L001_R1_001.fastq.gz -2 SID16111_S6_L001_R2_001.fastq.gz Traceback (most recent call last): File "/home/serbe204/anaconda3/envs/CIRI/bin/CIRIquant", line 5, in <module> from CIRIquant.main import main File "/home/serbe204/anaconda3/envs/CIRI/lib/python2.7/site-packages/CIRIquant/main.py", line 191 if args.no_fsj: ^ IndentationError: unindent does not match any outer indentation level
Any recommendations?

kind regards

[kendomaniac]

I redirect your question to the package developer Cheers Raf From: stefanerb89 ***@***.***> Date: Monday, 26 September 2022 at 11:09 To: kendomaniac/docker4seq ***@***.***> Cc: Subscribed ***@***.***> Subject: [kendomaniac/docker4seq] CiriQuant Python Version 2.7 Error (Issue #5) I got this error:

…

-1 SID16111_S6_L001_R1_001.fastq.gz -2 SID16111_S6_L001_R2_001.fastq.gz Traceback (most recent call last): File "/home/serbe204/anaconda3/envs/CIRI/bin/CIRIquant", line 5, in from CIRIquant.main import main File "/home/serbe204/anaconda3/envs/CIRI/lib/python2.7/site-packages/CIRIquant/main.py", line 191 if args.no_fsj: ^ IndentationError: unindent does not match any outer indentation level Any recommendations? kind regards — Reply to this email directly, view it on GitHub<#5>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACTBYA2LGPHNGQCBD7ECSYLWAFR4NANCNFSM6AAAAAAQVSU5XM>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[giuferrero]

Hi stefanerb89,
Can you indicate to me the command that you used to run the analysis?
Best,
Giulio

[stefanerb89]

Hey Giulio,   I forget the command:   CIRIquant -t 20 -1 SID16111_S6_L001_R1_001.fastq.gz -2 SID16111_S6_L001_R2_001.fastq.gz --config /home/serbe204/Documents/config.yml -o /home/serbe204/Documents/KS_bulk -p SID16111 --no-fsj   Cheers Gesendet: Montag, 26. September 2022 um 16:56 Uhr Von: "giuferrero" ***@***.***> An: "kendomaniac/docker4seq" ***@***.***> Cc: "stefanerb89" ***@***.***>, "Author" ***@***.***> Betreff: Re: [kendomaniac/docker4seq] CiriQuant Python Version 2.7 Error (Issue #5)   Hi stefanerb89, Can you indicate to me the command that you used to run the analysis? Best, Giulio — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>

[stefanerb89]

Dear Giulio,   this is my log file. All paths in my config.yml are correct. Maybe it is a disc space error?   kind regards Stephan           Gesendet: Montag, 26. September 2022 um 16:56 Uhr Von: "giuferrero" ***@***.***> An: "kendomaniac/docker4seq" ***@***.***> Cc: "stefanerb89" ***@***.***>, "Author" ***@***.***> Betreff: Re: [kendomaniac/docker4seq] CiriQuant Python Version 2.7 Error (Issue #5)   Hi stefanerb89, Can you indicate to me the command that you used to run the analysis? Best, Giulio — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>

[giuferrero]

Hi Stephan,
I believed that you were talking about our Docker4Seq functions for the circRNA analysis, but you are discussing about CIRCquant and we are not the authors of this tool.
Please refer to the right authors of this method by looking at their website:
https://github.com/bioinfo-biols/CIRIquant
Best regards,
Giulio Ferrero