>>> a = mi.get_info('NM_006445.4:c.1203T>G')
INFO:root:Variant: NM_006445.4:c.1203T>G . Trying to map variant in the reference assembly with biocommons
INFO:root:Trying biocommon method: splign
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/Users/alexandroskanterakis/anaconda2/lib/python2.7/site-packages/MutationInfo-0.0.1-py2.7.egg/MutationInfo/__init__.py", line 825, in get_info
hgvs_reference_assembly = biocommons_vm_method.c_to_g(hgvs)
File "/Users/alexandroskanterakis/anaconda2/lib/python2.7/site-packages/hgvs-0.4.9-py2.7.egg/hgvs/variantmapper.py", line 422, in c_to_g
File "/Users/alexandroskanterakis/anaconda2/lib/python2.7/site-packages/hgvs-0.4.9-py2.7.egg/hgvs/variantmapper.py", line 465, in _alt_ac_for_tx_ac
File "/Users/alexandroskanterakis/anaconda2/lib/python2.7/site-packages/hgvs-0.4.9-py2.7.egg/hgvs/decorators/lru_cache.py", line 133, in wrapper
File "/Users/alexandroskanterakis/anaconda2/lib/python2.7/site-packages/hgvs-0.4.9-py2.7.egg/hgvs/dataproviders/uta.py", line 370, in get_tx_mapping_options
File "/Users/alexandroskanterakis/anaconda2/lib/python2.7/site-packages/hgvs-0.4.9-py2.7.egg/hgvs/dataproviders/uta.py", line 159, in _fetchall
File "/Users/alexandroskanterakis/anaconda2/lib/python2.7/contextlib.py", line 17, in __enter__
return self.gen.next()
File "/Users/alexandroskanterakis/anaconda2/lib/python2.7/site-packages/hgvs-0.4.9-py2.7.egg/hgvs/dataproviders/uta.py", line 529, in _get_cursor
File "/Users/alexandroskanterakis/anaconda2/lib/python2.7/site-packages/psycopg2-2.6.2-py2.7-macosx-10.6-x86_64.egg/psycopg2/extras.py", line 120, in execute
return super(DictCursor, self).execute(query, vars)
psycopg2.OperationalError: SSL SYSCALL error: Operation timed out
