biomedical-segmentation/docker-compose.yml at main · junming732/biomedical-segmentation · GitHub

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version: '3.8'

services:
  biomedical-cpu:
    build:
      context: .
      args:
        BASE_IMAGE: pytorch/pytorch:2.0.1-cpu
    container_name: biomedical-cpu
    volumes:
      - ./data:/app/data
      - ./results:/app/results
      - ./checkpoints:/app/checkpoints
    environment:
      - PYTHONPATH=/app
    command: python scripts/train.py

  biomedical-gpu:
    build:
      context: .
      args:
        BASE_IMAGE: pytorch/pytorch:2.0.1-cuda11.7-cudnn8-runtime
    container_name: biomedical-gpu
    volumes:
      - ./data:/app/data
      - ./results:/app/results
      - ./checkpoints:/app/checkpoints
    environment:
      - PYTHONPATH=/app
      - CUDA_VISIBLE_DEVICES=0
    deploy:
      resources:
        reservations:
          devices:
            - driver: nvidia
              count: 1
              capabilities: [gpu]
    command: python scripts/train.py

  jupyter:
    build:
      context: .
      args:
        BASE_IMAGE: pytorch/pytorch:2.0.1-cpu
    container_name: biomedical-jupyter
    ports:
      - "8888:8888"
    volumes:
      - ./data:/app/data
      - ./notebooks:/app/notebooks
      - ./results:/app/results
    environment:
      - PYTHONPATH=/app
    command: jupyter lab --ip=0.0.0.0 --port=8888 --no-browser --allow-root --NotebookApp.token=''