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---
layout: default
title: R-esources
---
The Cerebral Mastication blog has a nice list of R resources (<a href="http://www.cerebralmastication.com/r-resources/">http://www.cerebralmastication.com/r-resources/</a>)<br />
Pairach Piboonrungroj has a nice list of R tutorials (<a href="http://pairach.com/2012/02/26/r-tutorials-from-universities-around-the-world/">here/</a>)<br />
The Ecostudies blog R tricks (<a href="http://pvanb.wordpress.com/links-2/r-tips-tricks/">http://pvanb.wordpress.com/links-2/r-tips-tricks/</a>)<br />
<u><br />
</u><br />
<u>Get R here</u><br />
<a href="http://cran.r-project.org/">http://cran.r-project.org/</a><br />
<a href="http://inside-r.org/download" title="Download R"><img border="0" height="68" src="http://inside-r.org/sites/all/themes/rweb/assets/badges/download-r-badge-220-green.png" width="200" /></a><br />
<br />
<u>R IDE's, text editors (w/ plugins for R), and R environments (...not an exhaustive list)</u><br />
RStudio: <a href="http://www.rstudio.org/">http://www.rstudio.org/</a><br />
Tinn-R: <a href="http://www.sciviews.org/Tinn-R/">http://www.sciviews.org/Tinn-R/</a><br />
StatET: <a href="http://www.walware.de/goto/statet">http://www.walware.de/goto/statet</a><br />
Eclipse: <a href="http://www.eclipse.org/">http://www.eclipse.org/</a><br />
R Commander: <a href="http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/">http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/</a><br />
JGR: <a href="http://cran.r-project.org/web/packages/JGR/index.html">http://cran.r-project.org/web/packages/JGR/index.html</a><br />
Deducer: <a href="http://www.deducer.org/pmwiki/pmwiki.php?n=Main.DeducerManual">http://www.deducer.org/pmwiki/pmwiki.php?n=Main.DeducerManual</a><br />
Rattle: <a href="http://rattle.togaware.com/">http://rattle.togaware.com/</a><br />
RedR: <a href="http://www.red-r.org/">http://www.red-r.org/</a><br />
TextWrangler: <a href="http://www.barebones.com/products/textwrangler/">http://www.barebones.com/products/textwrangler/</a><br />
Notepad++: <a href="http://notepad-plus-plus.org/">http://notepad-plus-plus.org/</a>, with Npp2r plugin: <a href="http://sourceforge.net/projects/npptor/">http://sourceforge.net/projects/npptor/</a><br />
<br />
<br />
<u>R help</u><br />
Sign up for R-help mailing list here: <a href="https://stat.ethz.ch/mailman/listinfo/r-help">https://stat.ethz.ch/mailman/listinfo/r-help</a><br />
-remember to read the posting guide before posting to the listserve<br />
See here for R-help <i>phylogenetics</i>: <a href="https://stat.ethz.ch/mailman/listinfo/r-sig-phylo">https://stat.ethz.ch/mailman/listinfo/r-sig-phylo</a><br />
See here for R-help <i>ecology</i>: <a href="https://stat.ethz.ch/mailman/listinfo/r-sig-ecology">https://stat.ethz.ch/mailman/listinfo/r-sig-ecology</a><br />
See here for R-help on <i>mixed effects models</i>: <a href="https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models">https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models</a><br />
See here for R-help on <i>networks/graphs</i>: <a href="https://stat.ethz.ch/mailman/listinfo/r-sig-networks">https://stat.ethz.ch/mailman/listinfo/r-sig-networks</a><br />
[all R-help listserves: <a href="https://stat.ethz.ch/mailman/listinfo/">https://stat.ethz.ch/mailman/listinfo/</a>]<br />
<br />
Stackoverflow: <a href="http://stackoverflow.com/">http://stackoverflow.com/</a><br />
<br />
The R Journal: <a href="http://journal.r-project.org/">http://journal.r-project.org/</a><br />
<br />
Google groups, ggplot2: <a href="http://groups.google.com/group/ggplot2?pli=1">http://groups.google.com/group/ggplot2?pli=1</a><br />
<br />
R Graphical Manual: <a href="http://rgm2.lab.nig.ac.jp/RGM2/images.php?show=all&pageID=935">http://rgm2.lab.nig.ac.jp/RGM2/images.php?show=all&pageID=935</a><br />
<br />
R Bloggers: <a href="http://www.r-bloggers.com/">http://www.r-bloggers.com/</a><br />
<br />
R Graph Gallery: <a href="http://addictedtor.free.fr/graphiques/">http://addictedtor.free.fr/graphiques/</a><br />
<br />
Examples of figures in both Lattice and ggplot2: <a href="http://learnr.files.wordpress.com/2009/08/latbook_time1.pdf">http://learnr.files.wordpress.com/2009/08/latbook_time1.pdf</a><br />
<br />
Quick R: <a href="http://www.statmethods.net/index.html">http://www.statmethods.net/index.html</a><br />
<br />
CrossValidated: <a href="http://stats.stackexchange.com/">http://stats.stackexchange.com/</a><br />
<br />
R Inferno (pdf document): <a href="http://www.burns-stat.com/pages/Tutor/R_inferno.pdf">http://www.burns-stat.com/pages/Tutor/R_inferno.pdf</a><br />
<br />
Hadley Whickam's short courses: <a href="http://courses.had.co.nz/">http://courses.had.co.nz/</a><br />
<br />
<u></u><br />
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<u><br />
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<u>See these taskviews related to ecology and evolution:</u></div>
<div style="-webkit-text-decorations-in-effect: none;">
<ul>
<li><u><a href="http://cran.r-project.org/web/views/Environmetrics.html">Analysis of Ecological and Environmental Data</a></u></li>
<li><u><a href="http://cran.r-project.org/web/views/Phylogenetics.html">Phylogenetics</a></u></li>
<li><u><a href="http://cran.r-project.org/web/views/Cluster.html">Cluster Analysis</a></u></li>
<li><u><a href="http://cran.r-project.org/web/views/Spatial.html">Analysis of Spatial Data</a></u></li>
<li><u><a href="http://cran.r-project.org/web/views/Multivariate.html">Multivariate Statistics</a></u></li>
<li><u><a href="http://cran.r-project.org/web/views/Genetics.html">Statistical Genetics</a></u></li>
</ul>
</div>
<div style="-webkit-text-decorations-in-effect: none;">
<div>
</div>
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<u> </u><br />
<u><br />
</u><br />
<u>Phylogenetics</u><br />
R phylogenetics Wiki: <a href="http://www.r-phylo.org/wiki/HowTo/Table_of_Contents">http://www.r-phylo.org/wiki/HowTo/Table_of_Contents</a><br />
<br />
Bodega Phylogenetics Wiki: <a href="http://bodegaphylo.wikispot.org/Front_Page">http://bodegaphylo.wikispot.org/Front_Page</a><br />
-Phylogenetic signal: <a href="http://bodegaphylo.wikispot.org/IV._Testing_Phylogenetic_Signal_in_R">http://bodegaphylo.wikispot.org/IV._Testing_Phylogenetic_Signal_in_R</a><br />
-Morphological Evolution: <a href="http://bodegaphylo.wikispot.org/Morphological_evolution_in_R">http://bodegaphylo.wikispot.org/Morphological_evolution_in_R</a><br />
-Brownie (Brian O'Meara's program) tutorial: <a href="http://bodegaphylo.wikispot.org/Morphological_Diversification_and_Rates_of_Evolution">http://bodegaphylo.wikispot.org/Morphological_Diversification_and_Rates_of_Evolution</a><br />
<br />
Phyloseminar.org: <a href="http://phyloseminar.org/">http://phyloseminar.org/</a><br />
<br />
Liam Revell's blog Phylogenetic Tools for Comparative Biology: <a href="http://phytools.blogspot.com/2011/03/creating-star-phylogeny.html">http://phytools.blogspot.com/2011/03/creating-star-phylogeny.html</a><br />
<br />
Dechronization blog: <a href="http://treethinkers.blogspot.com/">http://treethinkers.blogspot.com/</a><br />
<br />
<br />
<br />
<u>R syntax highlighting for your blog!</u><br />
Pretty R: <a href="http://www.inside-r.org/pretty-r/tool">http://www.inside-r.org/pretty-r/tool</a><br />
<br />
<br />
<u>10 tips for making the best R graphics</u><br />
<a href="http://blog.revolutionanalytics.com/2009/01/10-tips-for-making-your-r-graphics-look-their-best.html">http://blog.revolutionanalytics.com/2009/01/10-tips-for-making-your-r-graphics-look-their-best.html</a><br />
<br />
<br />
<u>Comparison of data aggregation packages</u><br />
<a href="http://zvfak.blogspot.com/2011/03/applying-functions-on-groups-sqldf-plyr.html">http://zvfak.blogspot.com/2011/03/applying-functions-on-groups-sqldf-plyr.html</a><br />
<br />