ringtest/args.py at master · jorblancoa/ringtest · GitHub

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import argparse

parser = argparse.ArgumentParser()

# command line arguments

parser.add_argument("-nring",
                    metavar='N',
                    help="number of rings (default 16)",
                    type=int,
                    default=16)

parser.add_argument("-ncell",
                    metavar='N',
                    help="number of cells per ring (default 8)",
                    type=int,
                    default=8)

parser.add_argument('-npt',
                    metavar='N',
                    help="number of cells per type (default 8)",
                    type=int,
                    default=8)

parser.add_argument("-branch",
                    metavar='N',
                    nargs=2,
                    help="range of branches per cell (default 10 20)",
                    type=int,
                    default=[10, 20])

parser.add_argument("-compart",
                    metavar='N',
                    nargs=2,
                    help="range of compartments per branch (default [1,1])",
                    type=int,
                    default=[1, 1])

parser.add_argument("-tstop",
                    metavar='float',
                    help="stop time (ms) (default 100.0)",
                    type=float,
                    default=100.)

parser.add_argument("-gran",
                    metavar='N',
                    help="global Random123 index (default 0)",
                    type=int,
                    default=0)

parser.add_argument("-rparm",
                    dest='rparm',
                    action='store_true',
                    help="randomize parameters",
                    default=False)

parser.add_argument("-secmapping",
                    dest='secmapping',
                    action='store_true',
                    help="store section segment mapping",
                    default=False)

parser.add_argument("-show", action='store_true', help="show type topologies", default=False)

parser.add_argument("-gap", action='store_true', help="use gap junctions", default=False)

parser.add_argument("-runcn", action='store_true', help="run embedded coreneuron", default=False)

parser.add_argument("-nt", metavar='N', help="nthread", type=int, default=1)

parser.add_argument("-multisplit", action='store_true', default=False,
                   help="intra-rank thread balance. All pieces of cell on same rank.")

parser.add_argument("-coredat",
                    metavar='path',
                    help="folder for bbcorewrite hashname folders (default coredat)",
                    default='coredat')

#option to remove hash from coredat directory
parser.add_argument('-coredathash',
                    dest='appendhash',
                    action='store_true',
                    help="append argument's hash as a sub-directory to coredat directory",
                    default=False)