100_render.yml

name: 100_render_notes.yml
## GENERAL form of 100_emacs_notes.yaml
## TODO:
## issues with gettting file name correct.
## run manuually

run-name:  100_render general

on:
  workflow_dispatch:
    inputs:
      selected_filename:
        description: 'Enter the name of the file.'
        required: true
        type: choice
        options:
        - tech_notes/001_grep_regex_P_examples.qmd
        - tech_notes/002_grep_examples.qmd
        - tech_notes/250_quarto_knitr_SCSS_NOTES.qmd
        - tech_notes/280_emacs_notes.qmd
        - tech_notes/300_tech_notes.qmd
        - tech_notes/310_R_notes.qmd
        - tech_notes/810_pharmaverse_NOTES.qmd
        - tech_notes/910_basic_conditions_NOTES.qmd
        - jobs/2025_clinical_trials_resume.qmd

permissions:
  contents:  write

jobs:
  quarto:
    runs-on: ubuntu-latest

    steps:
    - name: echo the selected_file
      run: |
        echo "You selected this file ${{ github.event.inputs.selected_filename }}"

    - uses: r-lib/actions/setup-r@v2
      with:
        use-public-rspm: true

    - name: Checkout repository
      uses: actions/checkout@v4.2.2

    - name: Set up Quarto
      uses: quarto-dev/quarto-actions/setup@v2
      with:
        version: LATEST

    - name:  install knitr
      run:  Rscript -e 'install.packages("knitr")'

    - name:  install rmarkdown, et al
      run:  Rscript -e 'install.packages(c("rmarkdown", "rlang", "lubridate"))'

    - name: create output file name, then use in next chunk
      run:  echo  "Begin ${{ github.event.inputs.selected_filename }}"

    - name: Render Quarto document
      run: |
        quarto render ${{ github.event.inputs.selected_filename }} \
        --to gfm --output jobs.md 
        #quarto render 250_quarto_knitr_SCSS_NOTES.qmd --to gfm --output 250_quarto_knitr_SCSS_NOTES.md
        #quarto render README.Rmd	  --to gfm --output README.md

    - name: Render pdf
      run: |
        echo "Begin pdf"
        quarto render ${{ github.event.inputs.selected_filename }} \
        --to pdf --output jobs

    - name: Commit rendered file
      run: |
        git config --global user.name "github-actions[bot]"
        git config --global user.email "github-actions[bot]@users.noreply.github.com"
        git add .   # above line did not work?
        git commit -m "Update ${{ github.event.inputs.selected_filename }}" || \
          echo "no changes; nothing to commit"
        git push
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}