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Jupyter notebook cleanup #33

@jeffmm

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@jeffmm

I'm thinking of adding this tool to prevent git from tracking notebook outputs in the future: https://github.com/kynan/nbstripout

We can also remove outputs from the Jupyter notebooks from git history, since that is where the majority of the bloat of the repo comes from. This can be done using git filter-branch as described in the nbstripout repo.

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