diff --git a/docs/notebooks/apply_oe.ipynb b/docs/notebooks/apply_oe.ipynb
index 97a3d0b..1b92228 100644
--- a/docs/notebooks/apply_oe.ipynb
+++ b/docs/notebooks/apply_oe.ipynb
@@ -51,11 +51,11 @@
     "\n",
     "The script is run via the CLI. For example:\n",
     "\n",
-    "> `IC=$(isofit path imagecube)` sets the environment variable `IC` to the output of the command `isofit path imagecube`. This is just used to reuse the same output for multiple arguments.\n",
+    "> `IC=$(isofit path examples)/image_cube/small` sets the environment variable `IC` to the output of the command `isofit path examples/image_cube/small`. This is just used to reuse the same output for multiple arguments.\n",
     "> Depending on the user's isofit installation environment, this path may vary. This command ensures the correct path is retrieved\n",
     "\n",
     "```bash\n",
-    "  IC=$(isofit path imagecube)/small EX=$(isofit path examples)/image_cube/small \\\n",
+    "  IC=$(isofit path examples)/image_cube/small EX=$(isofit path examples)/image_cube/small \\\n",
     "  isofit apply_oe \\\n",
     "  $IC/ang20170323t202244_rdn_7000-7010 \\\n",
     "  $IC/ang20170323t202244_loc_7000-7010 \\\n",
@@ -114,9 +114,9 @@
     "    shutil.rmtree(o)\n",
     "\n",
     "apply_oe(\n",
-    "    input_radiance    = str(env.path(\"imagecube\", \"small\", \"ang20170323t202244_rdn_7000-7010\")),\n",
-    "    input_loc         = str(env.path(\"imagecube\", \"small\", \"ang20170323t202244_loc_7000-7010\")),\n",
-    "    input_obs         = str(env.path(\"imagecube\", \"small\", \"ang20170323t202244_obs_7000-7010\")),\n",
+    "    input_radiance    = str(env.path(\"examples\", \"image_cube\", \"small\", \"ang20170323t202244_rdn_7000-7010\")),\n",
+    "    input_loc         = str(env.path(\"examples\", \"image_cube\", \"small\", \"ang20170323t202244_loc_7000-7010\")),\n",
+    "    input_obs         = str(env.path(\"examples\", \"image_cube\", \"small\", \"ang20170323t202244_obs_7000-7010\")),\n",
     "    working_directory = str(output),\n",
     "    sensor            = \"ang\",\n",
     "    surface_path      = str(env.path(\"examples\", \"image_cube\", \"small\", \"configs\", \"surface.json\")),\n",
@@ -161,9 +161,9 @@
    "outputs": [],
    "source": [
     "# Load the input files\n",
-    "rdn_path = env.path(\"imagecube\", \"small\", \"ang20170323t202244_rdn_7000-7010\")\n",
-    "loc_path = env.path(\"imagecube\", \"small\", \"ang20170323t202244_loc_7000-7010\")\n",
-    "obs_path = env.path(\"imagecube\", \"small\", \"ang20170323t202244_obs_7000-7010\")\n",
+    "rdn_path = env.path(\"examples\", \"image_cube\", \"small\", \"ang20170323t202244_rdn_7000-7010\")\n",
+    "loc_path = env.path(\"examples\", \"image_cube\", \"small\", \"ang20170323t202244_loc_7000-7010\")\n",
+    "obs_path = env.path(\"examples\", \"image_cube\", \"small\", \"ang20170323t202244_obs_7000-7010\")\n",
     "\n",
     "rdn = envi.open(envi_header(str(rdn_path)))\n",
     "loc = envi.open(envi_header(str(loc_path)))\n",
@@ -300,7 +300,7 @@
     "See the following CLI call to run Apply OE with the analytical line algorithm:\n",
     "\n",
     "```bash\n",
-    "  IC=$(isofit path imagecube)/medium EX=$(isofit path examples)/image_cube/medium \\\n",
+    "  IC=$(isofit path examples)/image_cube/medium EX=$(isofit path examples)/image_cube/medium \\\n",
     "  isofit apply_oe \\\n",
     "  $IC/ang20170323t202244_rdn_7k-8k \\\n",
     "  $IC/ang20170323t202244_loc_7k-8k \\\n",
@@ -353,9 +353,9 @@
     "    shutil.rmtree(o)\n",
     "\n",
     "apply_oe(\n",
-    "    input_radiance    = str(env.path(\"imagecube\", \"medium\", \"ang20170323t202244_rdn_7k-8k\")),\n",
-    "    input_loc         = str(env.path(\"imagecube\", \"medium\", \"ang20170323t202244_loc_7k-8k\")),\n",
-    "    input_obs         = str(env.path(\"imagecube\", \"medium\", \"ang20170323t202244_obs_7k-8k\")),\n",
+    "    input_radiance    = str(env.path(\"examples\", \"image_cube\", \"medium\", \"ang20170323t202244_rdn_7000-7010\")),\n",
+    "    input_loc         = str(env.path(\"examples\", \"image_cube\", \"medium\", \"ang20170323t202244_loc_7000-7010\")),\n",
+    "    input_obs         = str(env.path(\"examples\", \"image_cube\", \"medium\", \"ang20170323t202244_obs_7000-7010\")),\n",
     "    working_directory = str(output),\n",
     "    sensor            = \"ang\",\n",
     "    surface_path      = str(env.path(\"examples\", \"image_cube\", \"medium\", \"configs\", \"surface.json\")),\n",
@@ -425,9 +425,9 @@
    "outputs": [],
    "source": [
     "# Plotting the input data\n",
-    "rdn_path = env.path(\"imagecube\", \"medium\", \"ang20170323t202244_rdn_7k-8k\")\n",
-    "loc_path = env.path(\"imagecube\", \"medium\", \"ang20170323t202244_loc_7k-8k\")\n",
-    "obs_path = env.path(\"imagecube\", \"medium\", \"ang20170323t202244_obs_7k-8k\")\n",
+    "rdn_path = env.path(\"examples\", \"image_cube\", \"medium\", \"ang20170323t202244_rdn_7000-7010\")\n",
+    "loc_path = env.path(\"examples\", \"image_cube\", \"medium\", \"ang20170323t202244_loc_7000-7010\")\n",
+    "obs_path = env.path(\"examples\", \"image_cube\", \"medium\", \"ang20170323t202244_obs_7000-7010\")\n",
     "\n",
     "subs_rdn_path = env.path(\"examples\", \"image_cube\", \"medium\", \"input\", \"ang20170323t202244_subs_recon_rdn\")\n",
     "subs_loc_path = env.path(\"examples\", \"image_cube\", \"medium\", \"input\", \"ang20170323t202244_subs_recon_loc\")\n",
@@ -556,9 +556,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "isofit",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
-   "name": "isofit"
+   "name": "python3"
   },
   "language_info": {
    "codemirror_mode": {
@@ -570,7 +570,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.8"
+   "version": "3.10.14"
   }
  },
  "nbformat": 4,
diff --git a/image_cube/medium/templates/analytical.args.json b/image_cube/medium/templates/analytical.args.json
index 75be7cc..223e0fb 100644
--- a/image_cube/medium/templates/analytical.args.json
+++ b/image_cube/medium/templates/analytical.args.json
@@ -1,7 +1,7 @@
 [
-  "{imagecube}/medium/ang20170323t202244_rdn_7k-8k",
-  "{imagecube}/medium/ang20170323t202244_loc_7k-8k",
-  "{imagecube}/medium/ang20170323t202244_obs_7k-8k",
+  "{examples}/image_cube/medium/ang20170323t202244_rdn_7k-8k",
+  "{examples}/image_cube/medium/ang20170323t202244_loc_7k-8k",
+  "{examples}/image_cube/medium/ang20170323t202244_obs_7k-8k",
   "{examples}/image_cube/medium",
   "ang",
   "--surface_path {examples}/image_cube/medium/configs/surface.json",
diff --git a/image_cube/medium/templates/default.args.json b/image_cube/medium/templates/default.args.json
index 46964bb..3efff74 100644
--- a/image_cube/medium/templates/default.args.json
+++ b/image_cube/medium/templates/default.args.json
@@ -1,7 +1,7 @@
 [
-  "{imagecube}/medium/ang20170323t202244_rdn_7k-8k",
-  "{imagecube}/medium/ang20170323t202244_loc_7k-8k",
-  "{imagecube}/medium/ang20170323t202244_obs_7k-8k",
+  "{examples}/image_cube/medium/ang20170323t202244_rdn_7k-8k",
+  "{examples}/image_cube/medium/ang20170323t202244_loc_7k-8k",
+  "{examples}/image_cube/medium/ang20170323t202244_obs_7k-8k",
   "{examples}/image_cube/medium",
   "ang",
   "--surface_path {examples}/image_cube/medium/configs/surface.json",
diff --git a/image_cube/medium/templates/empirical.args.json b/image_cube/medium/templates/empirical.args.json
index 9be5f7a..e371980 100644
--- a/image_cube/medium/templates/empirical.args.json
+++ b/image_cube/medium/templates/empirical.args.json
@@ -1,7 +1,7 @@
 [
-  "{imagecube}/medium/ang20170323t202244_rdn_7k-8k",
-  "{imagecube}/medium/ang20170323t202244_loc_7k-8k",
-  "{imagecube}/medium/ang20170323t202244_obs_7k-8k",
+  "{examples}/image_cube/medium/ang20170323t202244_rdn_7k-8k",
+  "{examples}/image_cube/medium/ang20170323t202244_loc_7k-8k",
+  "{examples}/image_cube/medium/ang20170323t202244_obs_7k-8k",
   "{examples}/image_cube/medium",
   "ang",
   "--surface_path {examples}/image_cube/medium/configs/surface.json",
diff --git a/image_cube/small/templates/analytical.args.json b/image_cube/small/templates/analytical.args.json
index 5fa23ad..4427c54 100644
--- a/image_cube/small/templates/analytical.args.json
+++ b/image_cube/small/templates/analytical.args.json
@@ -1,7 +1,7 @@
 [
-  "{imagecube}/small/ang20170323t202244_rdn_7000-7010",
-  "{imagecube}/small/ang20170323t202244_loc_7000-7010",
-  "{imagecube}/small/ang20170323t202244_obs_7000-7010",
+  "{examples}/image_cube/small/ang20170323t202244_rdn_7000-7010",
+  "{examples}/image_cube/small/ang20170323t202244_loc_7000-7010",
+  "{examples}/image_cube/small/ang20170323t202244_obs_7000-7010",
   "{examples}/image_cube/small",
   "ang",
   "--surface_path {examples}/image_cube/small/configs/surface.json",
diff --git a/image_cube/small/templates/default.args.json b/image_cube/small/templates/default.args.json
index 85e2b45..9c3dfd9 100644
--- a/image_cube/small/templates/default.args.json
+++ b/image_cube/small/templates/default.args.json
@@ -1,7 +1,7 @@
 [
-  "{imagecube}/small/ang20170323t202244_rdn_7000-7010",
-  "{imagecube}/small/ang20170323t202244_loc_7000-7010",
-  "{imagecube}/small/ang20170323t202244_obs_7000-7010",
+  "{examples}/image_cube/small/ang20170323t202244_rdn_7000-7010",
+  "{examples}/image_cube/small/ang20170323t202244_loc_7000-7010",
+  "{examples}/image_cube/small/ang20170323t202244_obs_7000-7010",
   "{examples}/image_cube/small",
   "ang",
   "--surface_path {examples}/image_cube/small/configs/surface.json",
diff --git a/image_cube/small/templates/empirical.args.json b/image_cube/small/templates/empirical.args.json
index 8fe4984..40cbbd9 100644
--- a/image_cube/small/templates/empirical.args.json
+++ b/image_cube/small/templates/empirical.args.json
@@ -1,7 +1,7 @@
 [
-  "{imagecube}/small/ang20170323t202244_rdn_7000-7010",
-  "{imagecube}/small/ang20170323t202244_loc_7000-7010",
-  "{imagecube}/small/ang20170323t202244_obs_7000-7010",
+  "{examples}/image_cube/small/ang20170323t202244_rdn_7000-7010",
+  "{examples}/image_cube/small/ang20170323t202244_loc_7000-7010",
+  "{examples}/image_cube/small/ang20170323t202244_obs_7000-7010",
   "{examples}/image_cube/small",
   "ang",
   "--surface_path {examples}/image_cube/small/configs/surface.json",