From c66bb0e9c4f6e199c4e72bec1423e82bea4917ee Mon Sep 17 00:00:00 2001 From: Ann Holmes Date: Wed, 23 Oct 2024 14:15:58 -0400 Subject: [PATCH] Corrected study metadata codesystem in Alias file --- .../CodeSystem-dataset-page-codes.json | 2 +- .../CodeSystem-measurement-codes.json | 2 +- ...plementationGuide-INCLUDE-Model-Forge.json | 2 +- fsh-generated/resources/List-dsc-dataset.json | 35 +++++++++++ .../Observation-dsc-dataset-details.json | 4 +- .../StructureDefinition-study-dataset.json | 60 +++++++++++++++++++ .../ValueSet-dataset-page-codes-vs.json | 2 +- input/fsh/Alias.fsh | 2 +- ...CodeSystem-clinical-data-source-types.json | 2 +- output/CodeSystem-data-access-types.json | 2 +- output/CodeSystem-data-categories.json | 2 +- output/CodeSystem-data-types.json | 2 +- output/CodeSystem-dataset-page-codes.json | 6 +- output/CodeSystem-enum-dataCategory.json | 2 +- output/CodeSystem-expected-data-category.json | 2 +- output/CodeSystem-experimental-strategy.json | 2 +- output/CodeSystem-family-types.json | 2 +- output/CodeSystem-guid-type.json | 4 +- output/CodeSystem-include-study-tables.json | 2 +- output/CodeSystem-measurement-codes.json | 4 +- .../CodeSystem-participant-lifespan-age.json | 2 +- output/CodeSystem-sample-types.json | 2 +- output/CodeSystem-study-page-codes.json | 2 +- output/CodeSystem-study-program.json | 2 +- ...plementationGuide-INCLUDE-Model-Forge.json | 2 +- ...ctureDefinition-IncludeLogicalDataset.json | 2 +- ...inition-IncludeLogicalDatasetManifest.json | 2 +- output/StructureDefinition-biospecimen.json | 2 +- ...Definition-contact-detail-institution.json | 2 +- ...ructureDefinition-dataset-external-id.json | 2 +- ...StructureDefinition-dataset-global-id.json | 2 +- output/StructureDefinition-dataset-name.json | 2 +- .../StructureDefinition-dataset-parent.json | 4 +- output/StructureDefinition-family-group.json | 2 +- ...ctureDefinition-family-id-observation.json | 4 +- .../StructureDefinition-file-size-unit.json | 2 +- output/StructureDefinition-file-size.json | 2 +- output/StructureDefinition-measurement.json | 4 +- ...reDefinition-research-study-reference.json | 2 +- output/StructureDefinition-study-code.json | 2 +- ...ctureDefinition-study-dataset-details.json | 4 +- ...tureDefinition-study-page-observation.json | 4 +- output/StructureDefinition-study-program.json | 2 +- output/ValueSet-dataset-page-codes-vs.json | 6 +- output/ValueSet-enum-dataCategory-vs.json | 2 +- output/ValueSet-family-types-vs.json | 2 +- output/ValueSet-measurement-vs.json | 2 +- output/ValueSet-sample-types-vs.json | 2 +- output/ValueSet-study-page-codes-vs.json | 2 +- output/ValueSet-study-program-vs.json | 2 +- 50 files changed, 155 insertions(+), 60 deletions(-) create mode 100644 fsh-generated/resources/List-dsc-dataset.json create mode 100644 fsh-generated/resources/StructureDefinition-study-dataset.json diff --git a/fsh-generated/resources/CodeSystem-dataset-page-codes.json b/fsh-generated/resources/CodeSystem-dataset-page-codes.json index 44fbcbc..4ea99d3 100644 --- a/fsh-generated/resources/CodeSystem-dataset-page-codes.json +++ b/fsh-generated/resources/CodeSystem-dataset-page-codes.json @@ -6,7 +6,7 @@ "id": "dataset-page-codes", "title": "Dataset Page Codes", "description": "Variables associated with table, dataset_meta, from INCLUDE datasets.", - "url": "https://includedcc.org/fhir/CodeSystem/data-dictionary/dataset_meta", + "url": "https://includedcc.org/fhir/code-systems/dataset_meta", "concept": [ { "code": "study-code", diff --git a/fsh-generated/resources/CodeSystem-measurement-codes.json b/fsh-generated/resources/CodeSystem-measurement-codes.json index 2142b50..ecc7902 100644 --- a/fsh-generated/resources/CodeSystem-measurement-codes.json +++ b/fsh-generated/resources/CodeSystem-measurement-codes.json @@ -5,7 +5,7 @@ "name": "MeasurementCodes", "id": "measurement-codes", "title": "Measurement Codes", - "description": "A complete set of codes used for the expected measurement types for INCLUDE/Kids First observations.\n", + "description": "A complete set of codes used for the expected measurement types for INCLUDE/Kids First observations.\r\n", "url": "http://includedcc.org/fhir/code-systems/measurement_codes", "concept": [ { diff --git a/fsh-generated/resources/ImplementationGuide-INCLUDE-Model-Forge.json b/fsh-generated/resources/ImplementationGuide-INCLUDE-Model-Forge.json index 1ef83ca..8c296e8 100644 --- a/fsh-generated/resources/ImplementationGuide-INCLUDE-Model-Forge.json +++ b/fsh-generated/resources/ImplementationGuide-INCLUDE-Model-Forge.json @@ -353,7 +353,7 @@ "reference": "CodeSystem/measurement-codes" }, "name": "Measurement Codes", - "description": "A complete set of codes used for the expected measurement types for INCLUDE/Kids First observations.\n", + "description": "A complete set of codes used for the expected measurement types for INCLUDE/Kids First observations.\r\n", "exampleBoolean": false }, { diff --git a/fsh-generated/resources/List-dsc-dataset.json b/fsh-generated/resources/List-dsc-dataset.json new file mode 100644 index 0000000..3b95924 --- /dev/null +++ b/fsh-generated/resources/List-dsc-dataset.json @@ -0,0 +1,35 @@ +{ + "resourceType": "List", + "id": "dsc-dataset", + "meta": { + "profile": [ + "https://include-dcc.github.io/include-model-forge/StructureDefinition/study-dataset" + ] + }, + "identifier": [ + { + "system": "http://some.url.org/for/external_ids", + "value": "DS-Connect-UNHAR (subject to change)" + } + ], + "status": "current", + "title": "DS-Connect Unharmonized Demographic/Clinical Data", + "mode": "working", + "entry": [ + { + "item": { + "reference": "DocumentReference/dsc-example-demographic-file" + } + }, + { + "item": { + "reference": "DocumentReference/dsc-example-condition-file" + } + }, + { + "item": { + "reference": "DocumentReference/dsc-example-dd-file" + } + } + ] +} diff --git a/fsh-generated/resources/Observation-dsc-dataset-details.json b/fsh-generated/resources/Observation-dsc-dataset-details.json index 6352996..d931270 100644 --- a/fsh-generated/resources/Observation-dsc-dataset-details.json +++ b/fsh-generated/resources/Observation-dsc-dataset-details.json @@ -21,7 +21,7 @@ "coding": [ { "code": "study-code", - "system": "https://includedcc.org/fhir/CodeSystem/data-dictionary/dataset_meta" + "system": "https://includedcc.org/fhir/code-systems/dataset_meta" } ] }, @@ -32,7 +32,7 @@ "coding": [ { "code": "dataset-name", - "system": "https://includedcc.org/fhir/CodeSystem/data-dictionary/dataset_meta" + "system": "https://includedcc.org/fhir/code-systems/dataset_meta" } ] }, diff --git a/fsh-generated/resources/StructureDefinition-study-dataset.json b/fsh-generated/resources/StructureDefinition-study-dataset.json new file mode 100644 index 0000000..6d86415 --- /dev/null +++ b/fsh-generated/resources/StructureDefinition-study-dataset.json @@ -0,0 +1,60 @@ +{ + "resourceType": "StructureDefinition", + "id": "study-dataset", + "url": "https://include-dcc.github.io/include-model-forge/StructureDefinition/study-dataset", + "name": "StudyDataset", + "title": "Research Study Dataset", + "status": "draft", + "description": "Research Study Dataset", + "fhirVersion": "4.0.1", + "kind": "resource", + "abstract": false, + "type": "List", + "baseDefinition": "http://hl7.org/fhir/StructureDefinition/List", + "derivation": "constraint", + "differential": { + "element": [ + { + "id": "List.identifier", + "path": "List.identifier", + "short": "Global ID, External ID", + "min": 1 + }, + { + "id": "List.title", + "path": "List.title", + "short": "Full name of the dataset, provided by contributor", + "min": 1 + }, + { + "id": "List.code", + "path": "List.code", + "patternCodeableConcept": { + "coding": [ + { + "code": "dataset", + "system": "https://includedcc.org/fhir/code-systems/include_study_tables" + } + ] + } + }, + { + "id": "List.entry", + "path": "List.entry", + "min": 1 + }, + { + "id": "List.entry.item", + "path": "List.entry.item", + "type": [ + { + "code": "Reference", + "targetProfile": [ + "http://hl7.org/fhir/StructureDefinition/DocumentReference" + ] + } + ] + } + ] + } +} diff --git a/fsh-generated/resources/ValueSet-dataset-page-codes-vs.json b/fsh-generated/resources/ValueSet-dataset-page-codes-vs.json index f749ce9..07d1ce2 100644 --- a/fsh-generated/resources/ValueSet-dataset-page-codes-vs.json +++ b/fsh-generated/resources/ValueSet-dataset-page-codes-vs.json @@ -10,7 +10,7 @@ "compose": { "include": [ { - "system": "https://includedcc.org/fhir/CodeSystem/data-dictionary/dataset_meta" + "system": "https://includedcc.org/fhir/code-systems/dataset_meta" } ] } diff --git a/input/fsh/Alias.fsh b/input/fsh/Alias.fsh index fb46395..0c406f5 100755 --- a/input/fsh/Alias.fsh +++ b/input/fsh/Alias.fsh @@ -47,7 +47,7 @@ Alias: $preservation-method = https://includedcc.org/fhir/code-systems/preservat Alias: $sample_types = https://includedcc.org/fhir/code-systems/sample_types Alias: $study_programs = https://includedcc.org/fhir/code-systems/programs Alias: $data_access_types = https://includedcc.org/fhir/code-systems/data_access_types -Alias: $dataset-meta = https://includedcc.org/fhir/CodeSystem/data-dictionary/dataset_meta +Alias: $dataset-meta = https://includedcc.org/fhir/code-systems/dataset_meta // ValueSet Alias: $v3-FamilyMember = http://terminology.hl7.org/ValueSet/v3-FamilyMember Alias: $measurement_codes = http://includedcc.org/fhir/code-systems/measurement_codes diff --git a/output/CodeSystem-clinical-data-source-types.json b/output/CodeSystem-clinical-data-source-types.json index f867c21..095f64a 100644 --- a/output/CodeSystem-clinical-data-source-types.json +++ b/output/CodeSystem-clinical-data-source-types.json @@ -11,7 +11,7 @@ "title" : "Clinical Data Source Types", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-data-access-types.json b/output/CodeSystem-data-access-types.json index ddaa719..aa84278 100644 --- a/output/CodeSystem-data-access-types.json +++ b/output/CodeSystem-data-access-types.json @@ -11,7 +11,7 @@ "title" : "Data Access Types", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-data-categories.json b/output/CodeSystem-data-categories.json index cc90f06..de8b347 100644 --- a/output/CodeSystem-data-categories.json +++ b/output/CodeSystem-data-categories.json @@ -11,7 +11,7 @@ "title" : "Data Categories", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-data-types.json b/output/CodeSystem-data-types.json index a2f13d0..1a1a236 100644 --- a/output/CodeSystem-data-types.json +++ b/output/CodeSystem-data-types.json @@ -11,7 +11,7 @@ "title" : "Data Types", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-dataset-page-codes.json b/output/CodeSystem-dataset-page-codes.json index 7156808..a7ee5f9 100644 --- a/output/CodeSystem-dataset-page-codes.json +++ b/output/CodeSystem-dataset-page-codes.json @@ -3,9 +3,9 @@ "id" : "dataset-page-codes", "text" : { "status" : "generated", - "div" : "

Generated Narrative: CodeSystem dataset-page-codes

This code system https://includedcc.org/fhir/CodeSystem/data-dictionary/dataset_meta defines the following codes:

CodeDisplay
study-code Study Code
dataset-name Dataset Name
dataset-description Dataset Description
dataset-global-id Dataset Global ID
dataset-external-id Dataset External ID
dataset-expected-number-of-participants Dataset Expected Number of Participants
expected-number-of-files Expected Number of Files
data-collection-start-year Data Collection Start Year
data-collection-end-year Data Collection End Year
data-category Dataset Data Category
data-type Dataset Data Type
experimental-strategy Dataset Experimental Strategy
experimental-platform Dataset Experimental Platform
publication Dataset Publication
access-limitations Access Limitations
access-requirements Access Requirements
dbGaP Dataset dbGaP
other-repository Other Repository
other-access-authority Other Access Authority
is-harmonized Is Harmonized
" + "div" : "

Generated Narrative: CodeSystem dataset-page-codes

This code system https://includedcc.org/fhir/code-systems/dataset_meta defines the following codes:

CodeDisplay
study-code Study Code
dataset-name Dataset Name
dataset-description Dataset Description
dataset-global-id Dataset Global ID
dataset-external-id Dataset External ID
dataset-expected-number-of-participants Dataset Expected Number of Participants
expected-number-of-files Expected Number of Files
data-collection-start-year Data Collection Start Year
data-collection-end-year Data Collection End Year
data-category Dataset Data Category
data-type Dataset Data Type
experimental-strategy Dataset Experimental Strategy
experimental-platform Dataset Experimental Platform
publication Dataset Publication
access-limitations Access Limitations
access-requirements Access Requirements
dbGaP Dataset dbGaP
other-repository Other Repository
other-access-authority Other Access Authority
is-harmonized Is Harmonized
" }, - "url" : "https://includedcc.org/fhir/CodeSystem/data-dictionary/dataset_meta", + "url" : "https://includedcc.org/fhir/code-systems/dataset_meta", "identifier" : [{ "use" : "official", "system" : "https://includedcc.org/fhir/data-dictionary/CodeSystem", @@ -16,7 +16,7 @@ "title" : "Dataset Page Codes", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-enum-dataCategory.json b/output/CodeSystem-enum-dataCategory.json index 3d39c22..c78273b 100644 --- a/output/CodeSystem-enum-dataCategory.json +++ b/output/CodeSystem-enum-dataCategory.json @@ -11,7 +11,7 @@ "title" : "Data Category", "status" : "draft", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-expected-data-category.json b/output/CodeSystem-expected-data-category.json index f9c67b4..0629e7e 100644 --- a/output/CodeSystem-expected-data-category.json +++ b/output/CodeSystem-expected-data-category.json @@ -11,7 +11,7 @@ "title" : "Expected Data Category", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-experimental-strategy.json b/output/CodeSystem-experimental-strategy.json index e04a62f..d98d0dd 100644 --- a/output/CodeSystem-experimental-strategy.json +++ b/output/CodeSystem-experimental-strategy.json @@ -11,7 +11,7 @@ "title" : "Experimental Strategy", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-family-types.json b/output/CodeSystem-family-types.json index 944511c..ebeedd3 100644 --- a/output/CodeSystem-family-types.json +++ b/output/CodeSystem-family-types.json @@ -11,7 +11,7 @@ "title" : "Family Types", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-guid-type.json b/output/CodeSystem-guid-type.json index 073a4f8..344de78 100644 --- a/output/CodeSystem-guid-type.json +++ b/output/CodeSystem-guid-type.json @@ -11,7 +11,7 @@ "title" : "GUID Type", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", @@ -42,4 +42,4 @@ "code" : "No-GUID", "display" : "No GUID" }] -} +} \ No newline at end of file diff --git a/output/CodeSystem-include-study-tables.json b/output/CodeSystem-include-study-tables.json index 9cef071..1b3dd23 100644 --- a/output/CodeSystem-include-study-tables.json +++ b/output/CodeSystem-include-study-tables.json @@ -11,7 +11,7 @@ "title" : "Include Study Tables", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-measurement-codes.json b/output/CodeSystem-measurement-codes.json index 5db4607..42e1f5c 100644 --- a/output/CodeSystem-measurement-codes.json +++ b/output/CodeSystem-measurement-codes.json @@ -11,7 +11,7 @@ "title" : "Measurement Codes", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", @@ -28,7 +28,7 @@ "use" : "work" }] }], - "description" : "A complete set of codes used for the expected measurement types for INCLUDE/Kids First observations.\n", + "description" : "A complete set of codes used for the expected measurement types for INCLUDE/Kids First observations.\r\n", "content" : "fragment", "concept" : [{ "code" : "Hemoglobin-level-at-birth", diff --git a/output/CodeSystem-participant-lifespan-age.json b/output/CodeSystem-participant-lifespan-age.json index 108a401..b5d2071 100644 --- a/output/CodeSystem-participant-lifespan-age.json +++ b/output/CodeSystem-participant-lifespan-age.json @@ -11,7 +11,7 @@ "title" : "Participant Lifespan Age", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-sample-types.json b/output/CodeSystem-sample-types.json index fb0107e..d5df2c2 100644 --- a/output/CodeSystem-sample-types.json +++ b/output/CodeSystem-sample-types.json @@ -11,7 +11,7 @@ "title" : "Sample Types", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-study-page-codes.json b/output/CodeSystem-study-page-codes.json index e7438ab..194c781 100644 --- a/output/CodeSystem-study-page-codes.json +++ b/output/CodeSystem-study-page-codes.json @@ -11,7 +11,7 @@ "title" : "Study Page Codes", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/CodeSystem-study-program.json b/output/CodeSystem-study-program.json index 5a3898f..ec1bef0 100644 --- a/output/CodeSystem-study-program.json +++ b/output/CodeSystem-study-program.json @@ -11,7 +11,7 @@ "title" : "Study Programs", "status" : "active", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/ImplementationGuide-INCLUDE-Model-Forge.json b/output/ImplementationGuide-INCLUDE-Model-Forge.json index 2646ea2..75d5f88 100644 --- a/output/ImplementationGuide-INCLUDE-Model-Forge.json +++ b/output/ImplementationGuide-INCLUDE-Model-Forge.json @@ -10,7 +10,7 @@ "name" : "INCLUDEModelForgeIG", "title" : "INCLUDE Model Forge Implementation Guide", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-IncludeLogicalDataset.json b/output/StructureDefinition-IncludeLogicalDataset.json index ea71788..71a305c 100644 --- a/output/StructureDefinition-IncludeLogicalDataset.json +++ b/output/StructureDefinition-IncludeLogicalDataset.json @@ -10,7 +10,7 @@ "name" : "IncludeDataset", "title" : "Information about a specific grouping of data files", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-IncludeLogicalDatasetManifest.json b/output/StructureDefinition-IncludeLogicalDatasetManifest.json index 25320e0..665a2e8 100644 --- a/output/StructureDefinition-IncludeLogicalDatasetManifest.json +++ b/output/StructureDefinition-IncludeLogicalDatasetManifest.json @@ -10,7 +10,7 @@ "name" : "IncludeDatasetManifest", "title" : "Include Logical Model for Dataset Manifest", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-biospecimen.json b/output/StructureDefinition-biospecimen.json index a2bb003..f4b692c 100644 --- a/output/StructureDefinition-biospecimen.json +++ b/output/StructureDefinition-biospecimen.json @@ -10,7 +10,7 @@ "name" : "Biospecimen", "title" : "Biospecimen", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-contact-detail-institution.json b/output/StructureDefinition-contact-detail-institution.json index 03cd114..2ef16da 100644 --- a/output/StructureDefinition-contact-detail-institution.json +++ b/output/StructureDefinition-contact-detail-institution.json @@ -10,7 +10,7 @@ "name" : "ContactDetailInstitution", "title" : "Contact Detail Institution", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-dataset-external-id.json b/output/StructureDefinition-dataset-external-id.json index 88a7f80..153606e 100644 --- a/output/StructureDefinition-dataset-external-id.json +++ b/output/StructureDefinition-dataset-external-id.json @@ -10,7 +10,7 @@ "name" : "DatasetExternalId", "title" : "Dataset External Id", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-dataset-global-id.json b/output/StructureDefinition-dataset-global-id.json index c9a7c52..ec59f1f 100644 --- a/output/StructureDefinition-dataset-global-id.json +++ b/output/StructureDefinition-dataset-global-id.json @@ -10,7 +10,7 @@ "name" : "DatasetGlobalId", "title" : "Dataset Global Id", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-dataset-name.json b/output/StructureDefinition-dataset-name.json index 6ba8b7a..0f096fa 100644 --- a/output/StructureDefinition-dataset-name.json +++ b/output/StructureDefinition-dataset-name.json @@ -10,7 +10,7 @@ "name" : "DatasetName", "title" : "Dataset Name", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-dataset-parent.json b/output/StructureDefinition-dataset-parent.json index e83a5be..7ce0127 100644 --- a/output/StructureDefinition-dataset-parent.json +++ b/output/StructureDefinition-dataset-parent.json @@ -3,14 +3,14 @@ "id" : "dataset-parent", "text" : { "status" : "extensions", - "div" : "

Generated Narrative: StructureDefinition dataset-parent

\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n
NameFlagsCard.TypeDescription & Constraints\"doco\"
\".\"\".\" Extension 0..*ExtensionDataset Parent
\".\"\".\"\".\" extension 1..*ExtensionExtension
\".\"\".\"\".\" Slices for extension Content/Rules for all slices
\".\"\".\"\".\"\".\" study 0..*stringStudy code
URL: https://include-dcc.github.io/include-model-forge/StructureDefinition/study-code
\".\"\".\"\".\" Slices for extension Content/Rules for all slices
\".\"\".\"\".\"\".\" dataset-name 1..1stringName of dataset, assigned by data contributor
URL: https://include-dcc.github.io/include-model-forge/StructureDefinition/dataset-name
\".\"\".\"\".\" Slices for extension Content/Rules for all slices
\".\"\".\"\".\"\".\" global_id 0..1stringINCLUDE dataset global identifier, assigned by DCC
URL: https://include-dcc.github.io/include-model-forge/StructureDefinition/dataset-global-id
\".\"\".\"\".\" Slices for extension Content/Rules for all slices
\".\"\".\"\".\"\".\" external_id 0..1stringINCLUDE dataset external identifier, assigned by DCC
URL: https://include-dcc.github.io/include-model-forge/StructureDefinition/dataset-external-id
\".\"\".\"\".\" url 1..1uri"https://include-dcc.github.io/include-model-forge/StructureDefinition/dataset-parent"
\".\"\".\"\".\" value[x] 0..0

\"doco\" Documentation for this format
" + "div" : "

Generated Narrative: StructureDefinition dataset-parent

\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n
NameFlagsCard.TypeDescription & Constraints\"doco\"
\".\"\".\" Extension 0..*ExtensionDataset Parent
\".\"\".\"\".\" extension 1..*ExtensionExtension
\".\"\".\"\".\" Slices for extension Content/Rules for all slices
\".\"\".\"\".\"\".\" study 0..*stringStudy code
URL: https://include-dcc.github.io/include-model-forge/StructureDefinition/study-code
\".\"\".\"\".\"\".\" dataset-name 1..1stringName of dataset, assigned by data contributor
URL: https://include-dcc.github.io/include-model-forge/StructureDefinition/dataset-name
\".\"\".\"\".\"\".\" global_id 0..1stringINCLUDE dataset global identifier, assigned by DCC
URL: https://include-dcc.github.io/include-model-forge/StructureDefinition/dataset-global-id
\".\"\".\"\".\"\".\" external_id 0..1stringINCLUDE dataset external identifier, assigned by DCC
URL: https://include-dcc.github.io/include-model-forge/StructureDefinition/dataset-external-id
\".\"\".\"\".\" url 1..1uri"https://include-dcc.github.io/include-model-forge/StructureDefinition/dataset-parent"
\".\"\".\"\".\" value[x] 0..0

\"doco\" Documentation for this format
" }, "url" : "https://include-dcc.github.io/include-model-forge/StructureDefinition/dataset-parent", "version" : "0.1.0", "name" : "DatasetParent", "title" : "Dataset Parent", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-family-group.json b/output/StructureDefinition-family-group.json index 7f0a70a..d1a045b 100644 --- a/output/StructureDefinition-family-group.json +++ b/output/StructureDefinition-family-group.json @@ -10,7 +10,7 @@ "name" : "FamilyGroup", "title" : "Family Group", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-family-id-observation.json b/output/StructureDefinition-family-id-observation.json index 20528c5..bc4d517 100644 --- a/output/StructureDefinition-family-id-observation.json +++ b/output/StructureDefinition-family-id-observation.json @@ -10,7 +10,7 @@ "name" : "FamilyIdObservation", "title" : "Family Id Observation", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", @@ -1774,7 +1774,7 @@ "path" : "Observation.hasMember", "short" : "Related resource that belongs to the Observation group", "definition" : "This observation is a group observation (e.g. a battery, a panel of tests, a set of vital sign measurements) that includes the target as a member of the group.", - "comment" : "When using this element, an observation will typically have either a value or a set of related resources, although both may be present in some cases. For a discussion on the ways Observations can assembled in groups together, see [Notes](http://hl7.org/fhir/R4/observation.html#obsgrouping) below. Note that a system may calculate results from [QuestionnaireResponse](questionnaireresponse.html) into a final score and represent the score as an Observation.", + "comment" : "When using this element, an observation will typically have either a value or a set of related resources, although both may be present in some cases. For a discussion on the ways Observations can assembled in groups together, see [Notes](http://hl7.org/fhir/R4/observation.html#obsgrouping) below. Note that a system may calculate results from [QuestionnaireResponse](http://hl7.org/fhir/R4/questionnaireresponse.html) into a final score and represent the score as an Observation.", "min" : 0, "max" : "*", "base" : { diff --git a/output/StructureDefinition-file-size-unit.json b/output/StructureDefinition-file-size-unit.json index cdda2b8..60a859e 100644 --- a/output/StructureDefinition-file-size-unit.json +++ b/output/StructureDefinition-file-size-unit.json @@ -10,7 +10,7 @@ "name" : "FileSizeUnit", "title" : "File Size Unit", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-file-size.json b/output/StructureDefinition-file-size.json index 66b4af5..6bb2f14 100644 --- a/output/StructureDefinition-file-size.json +++ b/output/StructureDefinition-file-size.json @@ -10,7 +10,7 @@ "name" : "FileSize", "title" : "File Size", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-measurement.json b/output/StructureDefinition-measurement.json index dc5f64c..f76d16c 100644 --- a/output/StructureDefinition-measurement.json +++ b/output/StructureDefinition-measurement.json @@ -10,7 +10,7 @@ "name" : "Measurement", "title" : "Measurement", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", @@ -1777,7 +1777,7 @@ "path" : "Observation.hasMember", "short" : "Related resource that belongs to the Observation group", "definition" : "This observation is a group observation (e.g. a battery, a panel of tests, a set of vital sign measurements) that includes the target as a member of the group.", - "comment" : "When using this element, an observation will typically have either a value or a set of related resources, although both may be present in some cases. For a discussion on the ways Observations can assembled in groups together, see [Notes](http://hl7.org/fhir/R4/observation.html#obsgrouping) below. Note that a system may calculate results from [QuestionnaireResponse](questionnaireresponse.html) into a final score and represent the score as an Observation.", + "comment" : "When using this element, an observation will typically have either a value or a set of related resources, although both may be present in some cases. For a discussion on the ways Observations can assembled in groups together, see [Notes](http://hl7.org/fhir/R4/observation.html#obsgrouping) below. Note that a system may calculate results from [QuestionnaireResponse](http://hl7.org/fhir/R4/questionnaireresponse.html) into a final score and represent the score as an Observation.", "min" : 0, "max" : "*", "base" : { diff --git a/output/StructureDefinition-research-study-reference.json b/output/StructureDefinition-research-study-reference.json index 63a0d71..456aaf4 100644 --- a/output/StructureDefinition-research-study-reference.json +++ b/output/StructureDefinition-research-study-reference.json @@ -10,7 +10,7 @@ "name" : "ResearchStudyReference", "title" : "Research Study", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-study-code.json b/output/StructureDefinition-study-code.json index 475ef68..800efac 100644 --- a/output/StructureDefinition-study-code.json +++ b/output/StructureDefinition-study-code.json @@ -10,7 +10,7 @@ "name" : "StudyCode", "title" : "Study Code", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/StructureDefinition-study-dataset-details.json b/output/StructureDefinition-study-dataset-details.json index 1f471c5..a4e9fcf 100644 --- a/output/StructureDefinition-study-dataset-details.json +++ b/output/StructureDefinition-study-dataset-details.json @@ -10,7 +10,7 @@ "name" : "StudyDatasetDetails", "title" : "Study Dataset Details", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", @@ -1812,7 +1812,7 @@ "path" : "Observation.hasMember", "short" : "Related resource that belongs to the Observation group", "definition" : "This observation is a group observation (e.g. a battery, a panel of tests, a set of vital sign measurements) that includes the target as a member of the group.", - "comment" : "When using this element, an observation will typically have either a value or a set of related resources, although both may be present in some cases. For a discussion on the ways Observations can assembled in groups together, see [Notes](http://hl7.org/fhir/R4/observation.html#obsgrouping) below. Note that a system may calculate results from [QuestionnaireResponse](questionnaireresponse.html) into a final score and represent the score as an Observation.", + "comment" : "When using this element, an observation will typically have either a value or a set of related resources, although both may be present in some cases. For a discussion on the ways Observations can assembled in groups together, see [Notes](http://hl7.org/fhir/R4/observation.html#obsgrouping) below. Note that a system may calculate results from [QuestionnaireResponse](http://hl7.org/fhir/R4/questionnaireresponse.html) into a final score and represent the score as an Observation.", "min" : 0, "max" : "*", "base" : { diff --git a/output/StructureDefinition-study-page-observation.json b/output/StructureDefinition-study-page-observation.json index c0ec081..1b7d11f 100644 --- a/output/StructureDefinition-study-page-observation.json +++ b/output/StructureDefinition-study-page-observation.json @@ -10,7 +10,7 @@ "name" : "StudyPageObservation", "title" : "Study Page Observation", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", @@ -2229,7 +2229,7 @@ "path" : "Observation.hasMember", "short" : "Related resource that belongs to the Observation group", "definition" : "This observation is a group observation (e.g. a battery, a panel of tests, a set of vital sign measurements) that includes the target as a member of the group.", - "comment" : "When using this element, an observation will typically have either a value or a set of related resources, although both may be present in some cases. For a discussion on the ways Observations can assembled in groups together, see [Notes](http://hl7.org/fhir/R4/observation.html#obsgrouping) below. Note that a system may calculate results from [QuestionnaireResponse](questionnaireresponse.html) into a final score and represent the score as an Observation.", + "comment" : "When using this element, an observation will typically have either a value or a set of related resources, although both may be present in some cases. For a discussion on the ways Observations can assembled in groups together, see [Notes](http://hl7.org/fhir/R4/observation.html#obsgrouping) below. Note that a system may calculate results from [QuestionnaireResponse](http://hl7.org/fhir/R4/questionnaireresponse.html) into a final score and represent the score as an Observation.", "min" : 0, "max" : "*", "base" : { diff --git a/output/StructureDefinition-study-program.json b/output/StructureDefinition-study-program.json index 9a92d6a..fa4f2b8 100644 --- a/output/StructureDefinition-study-program.json +++ b/output/StructureDefinition-study-program.json @@ -10,7 +10,7 @@ "name" : "StudyProgram", "title" : "Study Program", "status" : "draft", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/ValueSet-dataset-page-codes-vs.json b/output/ValueSet-dataset-page-codes-vs.json index 207bfee..aa1fcf8 100644 --- a/output/ValueSet-dataset-page-codes-vs.json +++ b/output/ValueSet-dataset-page-codes-vs.json @@ -3,14 +3,14 @@ "id" : "dataset-page-codes-vs", "text" : { "status" : "generated", - "div" : "

Generated Narrative: ValueSet dataset-page-codes-vs

" + "div" : "

Generated Narrative: ValueSet dataset-page-codes-vs

" }, "url" : "https://include-dcc.github.io/include-model-forge/ValueSet/dataset-page-codes-vs", "version" : "0.1.0", "name" : "DatasetPageCodesVS", "title" : "Dataset Page Codes", "status" : "active", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", @@ -30,7 +30,7 @@ "description" : "Valueset representing columns from the table, dataset_meta, from INCLUDE datasets.", "compose" : { "include" : [{ - "system" : "https://includedcc.org/fhir/CodeSystem/data-dictionary/dataset_meta" + "system" : "https://includedcc.org/fhir/code-systems/dataset_meta" }] } } \ No newline at end of file diff --git a/output/ValueSet-enum-dataCategory-vs.json b/output/ValueSet-enum-dataCategory-vs.json index 0403abd..4edfbc8 100644 --- a/output/ValueSet-enum-dataCategory-vs.json +++ b/output/ValueSet-enum-dataCategory-vs.json @@ -11,7 +11,7 @@ "title" : "Data Category", "status" : "draft", "experimental" : false, - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/ValueSet-family-types-vs.json b/output/ValueSet-family-types-vs.json index d6c7233..4c826c2 100644 --- a/output/ValueSet-family-types-vs.json +++ b/output/ValueSet-family-types-vs.json @@ -10,7 +10,7 @@ "name" : "FamilyTypesVS", "title" : "Family Types Codes", "status" : "active", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/ValueSet-measurement-vs.json b/output/ValueSet-measurement-vs.json index 3690afd..99978d2 100644 --- a/output/ValueSet-measurement-vs.json +++ b/output/ValueSet-measurement-vs.json @@ -10,7 +10,7 @@ "name" : "MeasurementVS", "title" : "Measurement Codes", "status" : "active", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/ValueSet-sample-types-vs.json b/output/ValueSet-sample-types-vs.json index 174f061..2d0d24c 100644 --- a/output/ValueSet-sample-types-vs.json +++ b/output/ValueSet-sample-types-vs.json @@ -10,7 +10,7 @@ "name" : "SampleTypesVS", "title" : "Sample Types Codes", "status" : "active", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/ValueSet-study-page-codes-vs.json b/output/ValueSet-study-page-codes-vs.json index 0ca8d6d..324478e 100644 --- a/output/ValueSet-study-page-codes-vs.json +++ b/output/ValueSet-study-page-codes-vs.json @@ -10,7 +10,7 @@ "name" : "StudyPageCodesVS", "title" : "Study Page Codes", "status" : "active", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group", diff --git a/output/ValueSet-study-program-vs.json b/output/ValueSet-study-program-vs.json index 2cef24b..78f1e4b 100644 --- a/output/ValueSet-study-program-vs.json +++ b/output/ValueSet-study-program-vs.json @@ -10,7 +10,7 @@ "name" : "StudyProgramVS", "title" : "Study Programs", "status" : "active", - "date" : "2024-10-14T10:59:31-05:00", + "date" : "2024-10-23T13:59:29-04:00", "publisher" : "NCPI FHIR Working Group", "contact" : [{ "name" : "NCPI FHIR Working Group",