includeImogenPaths.m

function includeImogenPaths()
% Load the paths relative to the Imogen root path into the matlab path variable, giving access to
% all of the routines without having to change the current directory procedurally.

    %--- Add default directories ---%
    %       Iterates over the list of directories provided below and adds them and all their
    %       subdirectories to the Matlab environmental path to access standard Imogen functionality.
    directories = {'classes','equilibrium','experiment','fluid','enums','utils','sources', ...
                   'io','magnet','pressure','run','save','shifting', ...
                   'time','treadmill','users','utils','external','visualization', ...
                   'flux','gpuclass',''};

    pathToHere = fileparts(mfilename('fullpath'));
    addpath(pathToHere); % Add base Imogen directory without subdirectories.
    
    for i=1:length(directories)
        addpath(genpath([pathToHere filesep directories{i}])); 
    end

    %--- Add compatibility directories ---%
    %       To deal with incompatibilities created by multiple Matlab versions, as well as missing
    %       toolboxes or related functionality, imogen includes a compat directory. Each 
    %       subdirectory in this path stores contains the compatibility functions necessary to 
    %       restore compatibility for Imogen in non-standard envrionmental situations. Add these
    %       paths only as needed.
    compat      = [filesep 'compat' filesep];
    compWarn    = 'Imogen:Compatibility';
    
    %--- Matlab version ---%
    version     = ver('matlab');
    verYear     = str2double( version.Release(3:6) );
    verLabel    = version.Release(7);    
    
end