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imallona / fastder Public

forked from martina-lavanya/fastder

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Add sparse representations and bigwigs (performance), and strand-aware stitching (biology)#3

Merged

imallona merged 7 commits into

mainimallona/fastder:mainfrom

perf-mm-rr-memoryimallona/fastder:perf-mm-rr-memoryCopy head branch name to clipboard

Apr 29, 2026

Conversation Commits7 (7)Checks Files changed

Merged

Add sparse representations and bigwigs (performance), and strand-aware stitching (biology)#3
imallona merged 7 commits into
mainfrom
perf-mm-rr-memory

Commits

Commits on Apr 28, 2026

Drop unused recount3 annotation fields, add tests
imallona
committed
Update parser for performance so chr can be filtered in RR rows, shrink mm_chrom_sj, add tests
imallona
committed
Major changes to include sparse intervals, bigwigs, and strand-aware stitch_up, plus tests
imallona
committed
Fix stitching, update tests, document
imallona
committed
Document, trim unused stuff
imallona
committed

Commits on Apr 29, 2026

Bring back strand specificity
imallona
committed
Write the strand by the stitcher
imallona
committed

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