Dear, there is a syntax error in one line of code. I sincerely look forward to your answer and reply #2
Description
The wrong code is this line
m_vCntGenes[m_ninner] = (X[m_vIDX_cl.nonzero(), m_vIDX_ge.nonzero() > 0).sum()
A comprehensive bracket is missing here, and there is no echo between the right bracket and the left bracket
(X[m_vIDX_cl.nonzero()