Log function as Expression #77
Description
The log function is no longer functional in FEniCS.
For instance, f = Expression("log(x[0])", degree=2) yields the following error:
Moving new file over differing existing file:
src: /Users/jaddoghman/PycharmProjects/pythonProject/jitfailure-dolfin_expression_f60265c862d87700218c841a812dafcb/error.log.6ea03de6066b4b9d83ac2b8ded7b64d0
dst: /Users/jaddoghman/PycharmProjects/pythonProject/jitfailure-dolfin_expression_f60265c862d87700218c841a812dafcb/error.log
backup: /Users/jaddoghman/PycharmProjects/pythonProject/jitfailure-dolfin_expression_f60265c862d87700218c841a812dafcb/error.log.old
------------------- Start compiler output ------------------------
/var/folders/ss/zp8nt0fj6sq7cbyhdz9w52q40000gp/T/tmpi7ash_kk/dolfin_expression_f60265c862d87700218c841a812dafcb.cpp:61:23: error: no matching function for call to 'log'
values[0] = log(x[0]);
^~~
/Users/jaddoghman/opt/anaconda3/envs/fenics2018/include/dolfin/log/log.h:103:8: note: candidate function not viable: requires at least 2 arguments, but 1 was provided
void log(int debug_level, std::string msg, ...);
^
1 error generated.
------------------- End compiler output ------------------------
Compilation failed! Sources, command, and errors have been written to: /Users/jaddoghman/PycharmProjects/pythonProject/jitfailure-dolfin_expression_f60265c862d87700218c841a812dafcb
Traceback (most recent call last):
File "/Users/jaddoghman/opt/anaconda3/envs/fenics2018/lib/python3.7/site-packages/dolfin/jit/jit.py", line 167, in compile_class
mpi_comm=mpi_comm)
File "/Users/jaddoghman/opt/anaconda3/envs/fenics2018/lib/python3.7/site-packages/dolfin/jit/jit.py", line 47, in mpi_jit
return local_jit(*args, **kwargs)
File "/Users/jaddoghman/opt/anaconda3/envs/fenics2018/lib/python3.7/site-packages/dolfin/jit/jit.py", line 103, in dijitso_jit
return dijitso.jit(*args, **kwargs)
File "/Users/jaddoghman/opt/anaconda3/envs/fenics2018/lib/python3.7/site-packages/dijitso/jit.py", line 217, in jit
% err_info['fail_dir'], err_info)
dijitso.jit.DijitsoError: Dijitso JIT compilation failed, see '/Users/jaddoghman/PycharmProjects/pythonProject/jitfailure-dolfin_expression_f60265c862d87700218c841a812dafcb' for details
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "", line 1, in
File "/Applications/PyCharm.app/Contents/plugins/python/helpers/pydev/_pydev_bundle/pydev_umd.py", line 198, in runfile
pydev_imports.execfile(filename, global_vars, local_vars) # execute the script
File "/Applications/PyCharm.app/Contents/plugins/python/helpers/pydev/_pydev_imps/_pydev_execfile.py", line 18, in execfile
exec(compile(contents+"\n", file, 'exec'), glob, loc)
File "/Users/jaddoghman/PycharmProjects/pythonProject/Scratch2.py", line 8, in
f = Expression("log(x[0])", degree=2)
File "/Users/jaddoghman/opt/anaconda3/envs/fenics2018/lib/python3.7/site-packages/dolfin/function/expression.py", line 376, in init
self._cpp_object = jit.compile_expression(cpp_code, params)
File "/Users/jaddoghman/opt/anaconda3/envs/fenics2018/lib/python3.7/site-packages/dolfin/function/jit.py", line 158, in compile_expression
expression = compile_class(cpp_data, mpi_comm=mpi_comm)
File "/Users/jaddoghman/opt/anaconda3/envs/fenics2018/lib/python3.7/site-packages/dolfin/jit/jit.py", line 170, in compile_class
raise RuntimeError("Unable to compile C++ code with dijitso")
RuntimeError: Unable to compile C++ code with dijitso
Is there any alternative?
Thanks!