From 945d55c7966369f219bf54d2797d8c5b3494af0c Mon Sep 17 00:00:00 2001 From: Emilio Righi Date: Wed, 13 May 2026 18:31:04 +0200 Subject: [PATCH 1/4] ttt --- test1/annotations.tsv | 2 ++ test1/manifest.yaml | 9 +++++++++ 2 files changed, 11 insertions(+) create mode 100644 test1/annotations.tsv create mode 100644 test1/manifest.yaml diff --git a/test1/annotations.tsv b/test1/annotations.tsv new file mode 100644 index 0000000..6bd331c --- /dev/null +++ b/test1/annotations.tsv @@ -0,0 +1,2 @@ +assembly_accession access_url +GCF_048544455.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/048/544/455/GCF_048544455.1_ASM4854445v1/GCF_048544455.1_ASM4854445v1_genomic.gff.gz \ No newline at end of file diff --git a/test1/manifest.yaml b/test1/manifest.yaml new file mode 100644 index 0000000..e9b50ae --- /dev/null +++ b/test1/manifest.yaml @@ -0,0 +1,9 @@ +# Copy this folder to / and replace values before opening a PR. +provider_name: "Example Lab" +pipeline_method: "Braker3 + manual curation" +pipeline_version: "1.2.0" +project_display_name: "Example community annotations" +description: "Illustrative manifest for the registry layout (not a real dataset)." +# contact_email: "pi@example.org" +# license: "CC-BY-4.0" +# homepage_url: "https://example.org/project" From a73be3c7aaa3bb37e0652d3232b069ff4daaf79c Mon Sep 17 00:00:00 2001 From: Emilio Righi Date: Wed, 13 May 2026 18:37:07 +0200 Subject: [PATCH 2/4] ttt --- test1/annotations.tsv | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/test1/annotations.tsv b/test1/annotations.tsv index 6bd331c..d81e1cf 100644 --- a/test1/annotations.tsv +++ b/test1/annotations.tsv @@ -1,2 +1,3 @@ assembly_accession access_url -GCF_048544455.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/048/544/455/GCF_048544455.1_ASM4854445v1/GCF_048544455.1_ASM4854445v1_genomic.gff.gz \ No newline at end of file +GCF_048544455.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/048/544/455/GCF_048544455.1_ASM4854445v1/GCF_048544455.1_ASM4854445v1_genomic.gff.gz +GCF_048544456.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/048/544/455/GCF_048544455.1_ASM4854445v1/GCF_048544455.1_ASM4854445v1_genomic.gff.gz \ No newline at end of file From 7962d9742eef51b76923d60f845285b968cd2150 Mon Sep 17 00:00:00 2001 From: Emilio Righi Date: Wed, 13 May 2026 18:40:58 +0200 Subject: [PATCH 3/4] tttt --- test1/annotations.tsv | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/test1/annotations.tsv b/test1/annotations.tsv index d81e1cf..ae07545 100644 --- a/test1/annotations.tsv +++ b/test1/annotations.tsv @@ -1,3 +1,3 @@ assembly_accession access_url -GCF_048544455.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/048/544/455/GCF_048544455.1_ASM4854445v1/GCF_048544455.1_ASM4854445v1_genomic.gff.gz -GCF_048544456.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/048/544/455/GCF_048544455.1_ASM4854445v1/GCF_048544455.1_ASM4854445v1_genomic.gff.gz \ No newline at end of file +GCF_048544455.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/048/544/455/GCF_048544455.1_ASM4854445v1/GCF_048544455.1_ASM4854445v1_genomic.gff.gz +GCF_048544456.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/048/544/455/GCF_048544455.1_ASM4854445v1/GCF_048544455.1_ASM4854445v1_genomic.gff.gz From 6721030b07d9a28e7cf546ef535bce181396d5c6 Mon Sep 17 00:00:00 2001 From: Emilio Righi Date: Wed, 13 May 2026 18:45:52 +0200 Subject: [PATCH 4/4] tt --- test1/annotations.tsv | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/test1/annotations.tsv b/test1/annotations.tsv index ae07545..90c7d3d 100644 --- a/test1/annotations.tsv +++ b/test1/annotations.tsv @@ -1,3 +1,5 @@ assembly_accession access_url GCF_048544455.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/048/544/455/GCF_048544455.1_ASM4854445v1/GCF_048544455.1_ASM4854445v1_genomic.gff.gz -GCF_048544456.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/048/544/455/GCF_048544455.1_ASM4854445v1/GCF_048544455.1_ASM4854445v1_genomic.gff.gz +GCA_977020195.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/977/020/195/GCA_977020195.1_Ahypochondriacus_v3/GCA_977020195.1_Ahypochondriacus_v3_genomic.gff.gz +GCF_048544455.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/048/544/455/GCF_048544455.1_ASM4854445v1/GCF_048544455.1_ASM4854445v1_genomic.gff.gz +GCA_052324605.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/052/324/605/GCA_052324605.1_Asoc_v1/GCA_052324605.1_Asoc_v1_genomic.gff.gz