fix tests directory creation

Author: gpertea

prep_linux.sh

@@ -1,4 +1,4 @@
-#!/bin/bash -e
+#!/usr/bin/env bash
 ver=$(fgrep '#define VERSION ' stringtie.cpp)
 ver=${ver#*\"}
 ver=${ver%%\"*}
@@ -9,12 +9,12 @@ echo "preparing $linpack.tar.gz"
 echo "-------------------"
 /bin/rm -rf $linpack
 /bin/rm -f $linpack.tar.gz
-mkdir $linpack
+mkdir -p $linpack/tests
 cd $srcpack
 make clean
 make -j4 static-cpp
-cp LICENSE README.md run_tests.sh stringtie prepDE.py prepDE.py3 ../$linpack/
-#cp -r tests_exp_out ../$linpack/
+cp -p LICENSE README.md run_tests.sh stringtie prepDE.py prepDE.py3 ../$linpack/
+cp -p tests/README.md ../$linpack/tests/
 cd ..
 tar cvfz $linpack.tar.gz $linpack
 ls -l $linpack.tar.gz

prep_mac.sh

@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/usr/bin/env bash
 ver=$(fgrep '#define VERSION ' stringtie.cpp)
 ver=${ver#*\"}
 ver=${ver%%\"*}
@@ -8,10 +8,11 @@ echo "preparing $macpack.tar.gz"
 echo "-------------------"
 /bin/rm -rf $macpack
 /bin/rm -f $macpack.tar.gz
-mkdir $macpack
+mkdir -p $macpack/tests
 make clean
 make release
 cp -p LICENSE README.md run_tests.sh stringtie prepDE.py prepDE.py3 $macpack/
+cp -p tests/README.md $macpack/tests/
 #cp -r tests_exp_out $macpack/
 tar cvfz $macpack.tar.gz $macpack
 ls -l $macpack.tar.gz

prep_source.sh

@@ -9,8 +9,8 @@ echo "preparing $pack.tar.gz"
 echo "-------------------"
 /bin/rm -rf $pack
 /bin/rm -f $pack.tar.gz
-mkdir $pack
-mkdir $pack/gclib
+mkdir -p $pack/gclib
+mkdir -p $pack/tests
 #cd htslib
 #make clean
 #/bin/rm -f xlibs config.h lzma bzip2 libdeflate
@@ -34,6 +34,6 @@ gldir=stringtie-$ver/gclib/
 cp Makefile LICENSE README.md run_tests.sh stringtie.cpp prepDE.py prepDE.py3 {rlink,bundle,tablemaker,tmerge}.{h,cpp} $pack/
 cp ./gclib/{GVec,GList,khashl,GHashMap}.hh ./gclib/GBitVec.h ./gclib/xxhash.h ./gclib/wyhash.h $gldir
 cp ./gclib/{GArgs,GStr,GSam,GBase,gdna,codons,gff,GFaSeqGet,GFastaIndex,proc_mem,GThreads}.{h,cpp} $gldir
-#cp -r tests_exp_out $pack/
+cp ./tests/README.md $pack/tests/
 tar cvfz $pack.tar.gz $pack
 ls -l $pack.tar.gz

run_tests.sh

@@ -10,6 +10,7 @@ function unpack_test_data() {
   fi
   echo "..unpacking test data.."
   echo
+  mkdir -p $tdir
   tar -xzf "$ftests" -C $tdir/ --strip-components=1
   if [ ! -f $tdir/human-chr19_P.gff ]; then
      echo "Error: invalid test data archive?"