.env.example

# Virtual Environment Configuration
VENV_NAME=cellforge
VENV_PATH=./venv
PYTHON_VERSION=3.9


# LLM API Configuration
# OPENAI_API_KEY=your_openai_api_key
# ANTHROPIC_API_KEY=your_anthropic_api_key
# DEEPSEEK_API_KEY=your_deepseek_api_key
# LLAMA_API_KEY=your_llama_api_key
# QWEN_API_KEY=your_qwen_api_key
# API_KEY=your_api_key # your own custom model api key
# API_URL=your_base_url # your own custom model api url
# MODEL_NAME=gpt-4o-mini
# TOP_P=0.95
# TEMPERATURE=0.7

# Google Scholar serpapi config
SERPAPI_API_KEY=your_serpapi_key_here
SERPAPI_MAX_RESULTS=20
PUBMED_API_KEY=your_pubmed_api_key
PUBMED_MAX_RESULTS=20



EMBEDDING_MODEL_PATH=sentence-transformers/all-MiniLM-L6-v2

# Github API
GITHUB_TOKEN=your-github-token

# Model Configuration
# DEFAULT_MODEL=gpt-4-turbo-preview  # or claude-3-opus-20240229
# FALLBACK_MODEL=gpt-3.5-turbo

# Agent System Settings
CACHE_TTL=3600  
MAX_RETRIES=3   
TEMPERATURE=0.7 

# Search settings
MIN_CITATIONS_DEFAULT=10
MAX_RESULTS_PER_QUERY=50 
ARXIV_MAX_RESULTS=100
BIORXIV_MAX_RESULTS=50


# Storage Paths
DATA_DIR=./data
DOCUMENT_DIR=./data/documents
EMBEDDING_DIR=./data/embeddings
INDEX_DIR=./data/indices
CACHE_DIR=./data/cache
CACHE_TTL=3600

# Logging
LOG_LEVEL=INFO
LOG_FILE=./logs/app.log