herbrain/pyproject.toml at main · geometric-intelligence/herbrain · GitHub

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[build-system]
requires = ["setuptools", "wheel", "setuptools-scm"]
build-backend = "setuptools.build_meta"

[project]
authors = [
    { name = "Geometric Intelligence Lab" },
    { name = "Adele Myers", email = "adele@ucsb.edu" },
]
name = "herbrain"
dynamic = ["version"]
readme = "README.rst"
description = "herbrain apps."
license = { file = "LICENSE.md" }
classifiers = [
    "License :: OSI Approved :: MIT License",
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Programming Language :: Python :: 3",
]
requires-python = ">= 3.9"

[project.optional-dependencies]
app = [
    "typer",
    "hydra-core",
    "numpy",
    "pandas",
    "plotly",
    "trimesh",
    "requests",
    "scikit-learn",
    "polpo[dash,mri]@git+https://github.com/geometric-intelligence/polpo.git@main",
    "pyvista",
    "openai",
    "kaleido",
    "flask-compress",
]
doc = [
    "polpo[doc]@git+https://github.com/geometric-intelligence/polpo.git@main",
]
app-menstrual = ["herbrain[app]", "paramiko", "scp"]
lddmm = [
    "torch",
    "matplotlib",
    "pyvista",
    "deformetrica @ git+https://github.com/nguigs/deformetrica@spline-regression",
]

[project.urls]
repository = "https://github.com/geometric-intelligence/herbrain"

[tool.setuptools.dynamic]
version = { attr = "herbrain.__version__" }

[tool.setuptools.packages.find]
include = ["herbrain", "herbrain.*"]

[tool.setuptools.package-data]
herbrain = ["*.yaml", "*.png", "*.jpeg", "*.ico"]

[tool.ruff]
extend-include = ["*.ipynb"]

[tool.ruff.lint]
extend-select = ["I", "D"]
ignore = ["E731"]

[tool.ruff.lint.pydocstyle]
convention = "numpy"

[tool.ruff.lint.per-file-ignores]
"*/__init__.py" = ["F401"]