updating doc specification

bahill · bahill · commit d8a61c403744 · 2021-05-17T17:41:46.000-04:00
diff --git a/docs/v2/doc.html b/docs/v2/doc.html
@@ -1,6 +1,9 @@
 <!DOCTYPE meta PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
 <html>
    <head>
-      <meta http-equiv="refresh" content="0;url=https://genepattern.github.io/ExampleModule/v2/index.md">
+      <!-- this uses GitHub Pages to server up the documentation. You will need to enable GitHub Pages for you repository for this to work -->
+      <meta http-equiv="refresh" content="0;url=https://genepattern.github.io/ExampleModule/v2/">
    </head>
 </html>
+
+<!-- if instead you choose to include your documentation in your module zip you do not need this file - be sure to update your manifest accordingly -->
diff --git a/docs/v2/index.md b/docs/v2/index.md
@@ -25,9 +25,9 @@ It can be used as a template for future modules. It reads a file and potentially
 
 <!-- links to your source repository **specific to the release version**, the Docker image used by the module (as specified in your manifest), and (if applicable) the sha link to the Dockerfile used to build your Docker image -->
 ## Source Links
-* [The GenePattern ExampleModule v2 source repository](https://github.com/genepattern/ExampleModule/tree/v1.3)
+* [The GenePattern ExampleModule v2 source repository](https://github.com/genepattern/ExampleModule/tree/v1.4)
 * ExampleModule v2 uses the [genepattern/example-module:2 Docker image](https://hub.docker.com/layers/150060459/genepattern/example-module/2/images/sha256-ae4fffff67672e46b251f954ad226b7ad99403c456c1c19911b6ac82f1a27f2f?context=explore)
-* [The Dockerfile used to build that image is here.](https://github.com/genepattern/ExampleModule/blob/v1.3/Dockerfile)
+* [The Dockerfile used to build that image is here.](https://github.com/genepattern/ExampleModule/blob/v1.4/Dockerfile)
 
 ## Parameters
 <!-- short description of the module parameters and their default values, as well as whether they are required -->
@@ -59,10 +59,10 @@ It can be used as a template for future modules. It reads a file and potentially
 <!-- provide links to example data so that users can see what input & output should look like and so that they and we can use it to test -->
 
 Input:  
-[data_placeholder.txt](https://github.com/genepattern/ExampleModule/blob/v1.3/data/data_placeholder.txt)
+[data_placeholder.txt](https://github.com/genepattern/ExampleModule/blob/v1.4/data/data_placeholder.txt)
 
 Output:  
-[created_file_ground_truth.txt](https://github.com/genepattern/ExampleModule/blob/v1.3/gpunit/output/basic_test/created_file_ground_truth.txt)
+[created_file_ground_truth.txt](https://github.com/genepattern/ExampleModule/blob/v1.44gpunit/output/basic_test/created_file_ground_truth.txt)
 
 
 ## Requirements
@@ -79,5 +79,5 @@ Requires the [genepattern/example-module:2 Docker image](https://hub.docker.com/
 
 | Version | Release Date | Description                                 |
 ----------|--------------|---------------------------------------------|
-|  1.3  | May 17, 2021 | Added all required GP-Team Module release requirements and renamed as ExampleModule, from ABasicModule. |
+|  1.4  | May 17, 2021 | Added all required GP-Team Module release requirements and renamed as ExampleModule, from ABasicModule. |
 | 1 | May 1, 2018 | Initial version for team use. |
diff --git a/manifest b/manifest
@@ -9,7 +9,7 @@ commandLine=/ExampleModule/ExampleModule.py -f <filename> -a <add_custom_message
 #commandLine when run with source in module zip/taskLib:
 #commandLine=<python_3.6> <libdir>ExampleModule.py -f <filename> -a <add_custom_message> -m <message_to_add> -o <output_filename>
 job.docker.image=genepattern/example-module:2
-src.repo=https://github.com/genepattern/ExampleModule/tree/v1.3
+src.repo=https://github.com/genepattern/ExampleModule/tree/v1.4
 cpuType=any
 description=This is an example GenePattern module written in Python 3. It can be used as a template for future modules. It reads a file and potentially adds a line of text
 fileFormat=txt
