ngsflows/NAMESPACE at master · flow-r/ngsflows · GitHub

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# Generated by roxygen2: do not edit by hand

export(annotate)
export(annotate_mutect)
export(annotate_variants)
export(annotate_vcf)
export(avail_genomes)
export(bwa)
export(bwa.backtrack)
export(bwa.mem)
export(check_fastq_sheet)
export(create_fq_sheet)
export(create_sample_sheet)
export(fastqc)
export(fetch_genomes)
export(get_bam_chrs)
export(get_fasta_chrs)
export(haplotyper)
export(merge_sheets)
export(modules)
export(mutect)
export(parse_somatic_vcf)
export(parse_vcf)
export(picard_bam_fastq)
export(picard_merge)
export(picard_reorder)
export(picard_rg)
export(preprocess)
export(split_fq)
export(split_names_fastq)
export(star)
import(dplyr)
importFrom(RCurl,getURL)
importFrom(curl,curl_download)
importFrom(flowr,check_args)
importFrom(flowr,opts_flow)
importFrom(flowr,to_flowmat)
importFrom(flowr,whisker_render)
importFrom(params,read_sheet)
importFrom(stringr,str_c)
importFrom(tools,file_path_sans_ext)