biohack/requirements.txt at master · fils/biohack · GitHub

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# This file was autogenerated by uv via the following command:
#    uv pip compile pyproject.toml -o requirements.txt
asttokens==3.0.0
    # via stack-data
cachetools==5.5.2
    # via pyld
certifi==2025.1.31
    # via requests
cffi==1.17.1
    # via
    #   cryptography
    #   pynacl
charset-normalizer==3.4.1
    # via requests
comm==0.2.2
    # via ipywidgets
cryptography==44.0.2
    # via pyjwt
decorator==5.2.1
    # via ipython
deprecated==1.2.18
    # via pygithub
executing==2.2.0
    # via stack-data
frozendict==2.4.6
    # via pyld
idna==3.10
    # via requests
ipysigma==0.24.5
    # via biohack (pyproject.toml)
ipython==9.1.0
    # via ipywidgets
ipython-pygments-lexers==1.1.1
    # via ipython
ipywidgets==8.1.6
    # via ipysigma
jedi==0.19.2
    # via ipython
jupyterlab-widgets==3.0.14
    # via ipywidgets
lxml==5.3.2
    # via pyld
matplotlib-inline==0.1.7
    # via ipython
networkx==3.4.2
    # via biohack (pyproject.toml)
numpy==2.2.4
    # via pandas
pandas==2.2.3
    # via biohack (pyproject.toml)
parso==0.8.4
    # via jedi
pexpect==4.9.0
    # via ipython
prompt-toolkit==3.0.51
    # via ipython
ptyprocess==0.7.0
    # via pexpect
pure-eval==0.2.3
    # via stack-data
pycparser==2.22
    # via cffi
pygithub==2.6.1
    # via biohack (pyproject.toml)
pygments==2.19.1
    # via
    #   ipython
    #   ipython-pygments-lexers
pygraphml==2.4.2
    # via biohack (pyproject.toml)
pyjwt==2.10.1
    # via pygithub
pyld==2.0.4
    # via biohack (pyproject.toml)
pynacl==1.5.0
    # via pygithub
pyoxigraph==0.4.9
    # via biohack (pyproject.toml)
pyparsing==3.2.3
    # via rdflib
python-dateutil==2.9.0.post0
    # via pandas
pytz==2025.2
    # via pandas
rdflib==7.1.4
    # via biohack (pyproject.toml)
requests==2.32.3
    # via pygithub
six==1.17.0
    # via python-dateutil
stack-data==0.6.3
    # via ipython
traitlets==5.14.3
    # via
    #   comm
    #   ipython
    #   ipywidgets
    #   matplotlib-inline
typing-extensions==4.13.2
    # via pygithub
tzdata==2025.2
    # via pandas
urllib3==2.4.0
    # via
    #   pygithub
    #   requests
wcwidth==0.2.13
    # via prompt-toolkit
widgetsnbextension==4.0.14
    # via ipywidgets
wrapt==1.17.2
    # via deprecated
html2text==2024.2.26
    # via biohack (pyproject.toml)
PyPDF2==3.0.1
    # via biohack (pyproject.toml)