Python CI

Harden SQlite (#367) #1547

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Run time

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Job	Run time
Lint & Type Check	7m 34s
Batch Evaluation Tests	1m 17s
MCP End-to-End Tests	46s
Core Tests (Python 3.12)	6m 54s
Core Tests (Python 3.11)	7m 43s
Core Tests (Python 3.10)	6m 47s
Upload Coverage	8s
	31m 9s