Python CI

Replace SQlite with TinyDB #1540

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Run time

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Job	Run time
Lint & Type Check	1m 13s
Batch Evaluation Tests	1m 14s
MCP End-to-End Tests	50s
Core Tests (Python 3.12)	2m 12s
Core Tests (Python 3.11)	2m 12s
Core Tests (Python 3.10)	2m 12s
Upload Coverage	1s
	9m 54s