Python CI

add test on flags #1377

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Run time

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Job	Run time
Lint & Type Check	1m 4s
MCP End-to-End Tests	56s
Core Tests (Python 3.11)	6m 38s
Core Tests (Python 3.12)	6m 23s
Core Tests (Python 3.10)	6m 27s
Batch Evaluation Tests	1m 15s
Upload Coverage	8s
	22m 51s