Python CI

Adding Passed Threshold to Flags (#121) #524

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Run time

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Job	Run time
Lint & Type Check	1m 15s
Batch Evaluation Tests	1m 9s
MCP End-to-End Tests	47s
Core Tests (Python 3.12)	3m 50s
Core Tests (Python 3.10)	3m 37s
Core Tests (Python 3.11)	3m 48s
Upload Coverage	8s
	14m 34s