From 1c8276fb178a91a1b677395cda697cccce505454 Mon Sep 17 00:00:00 2001 From: Rory McNicholl Date: Tue, 30 Oct 2018 20:18:23 +0000 Subject: [PATCH 1/8] move issues_audit2 bin to a location it can be installed from --- lib/bin/issues_audit2 | 320 ------------------------------------------ 1 file changed, 320 deletions(-) delete mode 100755 lib/bin/issues_audit2 diff --git a/lib/bin/issues_audit2 b/lib/bin/issues_audit2 deleted file mode 100755 index 204efa1..0000000 --- a/lib/bin/issues_audit2 +++ /dev/null @@ -1,320 +0,0 @@ -#!/usr/bin/perl -w - -use FindBin; -use lib "$FindBin::Bin/../../perl_lib"; - -###################################################################### -# -# -###################################################################### - -=pod - -=head1 NAME - -B - Update the issues field of all eprints. - -=head1 SYNOPSIS - -B I [B] [eprint ids] - -=head1 DESCRIPTION - -This script updates the Issues field of all eprints -in the live archive and buffer. - -This script should probably be called from your "cron" system, soon after -midnight. Something like: - - # 00:23 every morning - 23 0 * * * /opt/eprints3/bin/isseus_audit my_repo_id - -This script will take longer as your repository grows, so initially you may -want to run it more frequently, or on very large systems you might move to -just run it on Sundays. - -=head1 ARGUMENTS - -=over 8 - -=item B - -The ID of the eprint repository to use. - -=back - -=head1 OPTIONS - -=over 8 - -=item B<--help> - -Print a brief help message and exit. - -=item B<--man> - -Print the full manual page and then exit. - -=item B<--quiet> - -Be vewwy vewwy quiet. This option will supress all output unless an error occurs. - -=item B<--verbose> - -Explain in detail what is going on. -May be repeated for greater effect. - -=item B<--version> - -Output version information and exit. - -=back - - -=cut - -use EPrints; - -use strict; -use Getopt::Long; -use Pod::Usage; -use Data::Dumper; - -my $version = 0; -my $verbose = 0; -my $quiet = 0; -my $help = 0; -my $man = 0; - -Getopt::Long::Configure("permute"); - -GetOptions( - 'help|?' => \$help, - 'man' => \$man, - 'version' => \$version, - 'verbose+' => \$verbose, - 'silent' => \$quiet, - 'quiet' => \$quiet -) || pod2usage( 2 ); -EPrints::Utils::cmd_version( "send_alerts" ) if $version; -pod2usage( 1 ) if $help; -pod2usage( -exitstatus => 0, -verbose => 2 ) if $man; -pod2usage( 2 ) if( @ARGV < 1 ); - -my $noise = 1; -$noise = 0 if( $quiet ); -$noise = 1+$verbose if( $verbose ); - -# Set STDOUT to auto flush (without needing a \n) -$|=1; - -my $repoid = shift(@ARGV); -my $session = new EPrints::Session( 1 , $repoid , $noise ); -if( !defined $session ) -{ - print STDERR "Failed to load repository: $repoid\n"; - exit 1; -} - -sub _set_item_issues($$); - -############################## - -#my $file = $session->config( "config_path" )."/issues2.xml"; -#if( -e $file ) -#{ -# my $doc = $session->get_repository->parse_xml( $file , 1 ); -# if( !defined $doc ) -# { -# EPrints::abort "Error parsing $file\n"; -# } -# -# my $issues_conf = ($doc->getElementsByTagName( "issues" ))[0]; -# if( !defined $issues_conf ) -# { -# EPrints::abort "Missing tag in $file\n"; -# } -#} -#else -#{ -# print "No $file - skipping\n" if( $noise > 1 ); -#} - -my $ds = $session->get_archive()->get_dataset( 'eprint' ); -my $list; -if( @ARGV ) -{ - $list = EPrints::List->new( - session => $session, - dataset => $ds, - ids => \@ARGV, - ); -} -else -{ - $list = $ds->search( - filters => [ - { meta_fields => [qw( eprint_status )], value => "inbox buffer archive deletion", - match => "EQ", merge => "ANY", } - ]); -} - -# Run all available Issues plugins -my @issues_plugins = $session->get_plugins( - type=>"Issues2", - is_available=>1 ); -my %item_issues; -my %info; - -foreach my $plugin (@issues_plugins) -{ - $info{$plugin} = { - issues => \%item_issues, - opts => { - list => $list, - }, - }; -} - -my $total = $list->count; -my $i = 0; - -print "Running plugins: ".join(', ', map { $_->get_name() } @issues_plugins)."\n" if( $noise > 0 ); - -$list->map(sub { - my( undef, undef, $item ) = @_; - foreach my $plugin ( @issues_plugins ) - { - $plugin->process_item_in_list( $item, $info{$plugin} ); - } - print sprintf("% 3s%%\r", sprintf("%d", $i++ / $total * 100)) if $noise > 1; -}); - -foreach my $plugin ( @issues_plugins ) -{ - print "Finishing plugin ".$plugin->get_name()."\n" if( $noise > 0 ); - $plugin->process_at_end( $info{$plugin} ); -} - -$i = 0; - -# Update the issues fields -print "Updating database\n" if $noise > 0; -$list->map(sub { - my( undef, undef, $item ) = @_; - - print sprintf("% 3s%%\r", sprintf("%d", $i++ / $total * 100)) if $noise > 1; - - my $value = $item_issues{$item->id}; - $value = [] if !defined $value; - for(@$value) - { - my $desc = $session->xml->to_string( $_->{description} ); - $session->xml->dispose( $_->{description} ); - $_->{description} = $desc; - } - # $item->set_item_issues( $value ); - _set_item_issues( $item, $value ); - $item->commit; -}); -print "Done updating database\n" if $noise > 0; - - -$list->dispose; - - -##################################### - -$session->terminate(); -exit; - -##################################### - -sub _set_item_issues($$) -{ - my( $self, $new_issues ) = @_; - - $new_issues = [] if !defined $new_issues; - - # tidy-up issues (should this be in the calling code?) - for(@$new_issues) - { - # default status to "discovered" - $_->{status} = "discovered" if !EPrints::Utils::is_set( $_->{status} ); - - # default item_issue_id to item_issue_type - $_->{id} = $_->{type} if !EPrints::Utils::is_set( $_->{id} ); - - # default timestamp to 'now' - $_->{timestamp} = EPrints::Time::get_iso_timestamp; - - # backwards compatibility - if( ref( $_->{description} ) ) - { - $_->{description} = $self->{session}->xhtml->to_xhtml( $_->{description} ); - } - } - - my %issues_map = map { $_->{id} => $_ } @$new_issues; - - my $current_issues = $self->value( "item_issues2" ); - $current_issues = [] if !defined $current_issues; - # clone, otherwise we can't detect changes - $current_issues = EPrints::Utils::clone( $current_issues ); - - # update existing issues - foreach my $issue (@$current_issues) - { - my $new_issue = delete $issues_map{$issue->{id}}; - if( defined $new_issue ) - { - # update description (may have changed) - $issue->{description} = $new_issue->{description} unless ! $new_issue->{description}; - $issue->{status} = $new_issue->{status} unless $issue->{status} && $issue->{status} eq "ignored"; - } - elsif( $issue->{status} eq "discovered" ) - { - ## $issue->{status} = "autoresolved"; - } - } - - # append all other new issues - foreach my $new_issue (@$new_issues) - { - next if !exists $issues_map{$new_issue->{id}}; - push @$current_issues, $new_issue; - } - - $self->set_value( "item_issues2", $current_issues ); # key difference -} - - - - -=head1 COPYRIGHT - -=for COPYRIGHT BEGIN - -Copyright 2000-2011 University of Southampton. - -=for COPYRIGHT END - -=for LICENSE BEGIN - -This file is part of EPrints L. - -EPrints is free software: you can redistribute it and/or modify it -under the terms of the GNU General Public License as published -by the Free Software Foundation, either version 3 of the License, or -(at your option) any later version. - -EPrints is distributed in the hope that it will be useful, but WITHOUT -ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or -FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public -License for more details. - -You should have received a copy of the GNU General Public License -along with EPrints. If not, see L. - -=for LICENSE END - From 03c1a7060c290993090b8e251f21ed787ece2bff Mon Sep 17 00:00:00 2001 From: Rory McNicholl Date: Tue, 30 Oct 2018 20:26:19 +0000 Subject: [PATCH 2/8] better loc for bin --- bin/issues_audit2 | 320 ++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 320 insertions(+) create mode 100755 bin/issues_audit2 diff --git a/bin/issues_audit2 b/bin/issues_audit2 new file mode 100755 index 0000000..204efa1 --- /dev/null +++ b/bin/issues_audit2 @@ -0,0 +1,320 @@ +#!/usr/bin/perl -w + +use FindBin; +use lib "$FindBin::Bin/../../perl_lib"; + +###################################################################### +# +# +###################################################################### + +=pod + +=head1 NAME + +B - Update the issues field of all eprints. + +=head1 SYNOPSIS + +B I [B] [eprint ids] + +=head1 DESCRIPTION + +This script updates the Issues field of all eprints +in the live archive and buffer. + +This script should probably be called from your "cron" system, soon after +midnight. Something like: + + # 00:23 every morning + 23 0 * * * /opt/eprints3/bin/isseus_audit my_repo_id + +This script will take longer as your repository grows, so initially you may +want to run it more frequently, or on very large systems you might move to +just run it on Sundays. + +=head1 ARGUMENTS + +=over 8 + +=item B + +The ID of the eprint repository to use. + +=back + +=head1 OPTIONS + +=over 8 + +=item B<--help> + +Print a brief help message and exit. + +=item B<--man> + +Print the full manual page and then exit. + +=item B<--quiet> + +Be vewwy vewwy quiet. This option will supress all output unless an error occurs. + +=item B<--verbose> + +Explain in detail what is going on. +May be repeated for greater effect. + +=item B<--version> + +Output version information and exit. + +=back + + +=cut + +use EPrints; + +use strict; +use Getopt::Long; +use Pod::Usage; +use Data::Dumper; + +my $version = 0; +my $verbose = 0; +my $quiet = 0; +my $help = 0; +my $man = 0; + +Getopt::Long::Configure("permute"); + +GetOptions( + 'help|?' => \$help, + 'man' => \$man, + 'version' => \$version, + 'verbose+' => \$verbose, + 'silent' => \$quiet, + 'quiet' => \$quiet +) || pod2usage( 2 ); +EPrints::Utils::cmd_version( "send_alerts" ) if $version; +pod2usage( 1 ) if $help; +pod2usage( -exitstatus => 0, -verbose => 2 ) if $man; +pod2usage( 2 ) if( @ARGV < 1 ); + +my $noise = 1; +$noise = 0 if( $quiet ); +$noise = 1+$verbose if( $verbose ); + +# Set STDOUT to auto flush (without needing a \n) +$|=1; + +my $repoid = shift(@ARGV); +my $session = new EPrints::Session( 1 , $repoid , $noise ); +if( !defined $session ) +{ + print STDERR "Failed to load repository: $repoid\n"; + exit 1; +} + +sub _set_item_issues($$); + +############################## + +#my $file = $session->config( "config_path" )."/issues2.xml"; +#if( -e $file ) +#{ +# my $doc = $session->get_repository->parse_xml( $file , 1 ); +# if( !defined $doc ) +# { +# EPrints::abort "Error parsing $file\n"; +# } +# +# my $issues_conf = ($doc->getElementsByTagName( "issues" ))[0]; +# if( !defined $issues_conf ) +# { +# EPrints::abort "Missing tag in $file\n"; +# } +#} +#else +#{ +# print "No $file - skipping\n" if( $noise > 1 ); +#} + +my $ds = $session->get_archive()->get_dataset( 'eprint' ); +my $list; +if( @ARGV ) +{ + $list = EPrints::List->new( + session => $session, + dataset => $ds, + ids => \@ARGV, + ); +} +else +{ + $list = $ds->search( + filters => [ + { meta_fields => [qw( eprint_status )], value => "inbox buffer archive deletion", + match => "EQ", merge => "ANY", } + ]); +} + +# Run all available Issues plugins +my @issues_plugins = $session->get_plugins( + type=>"Issues2", + is_available=>1 ); +my %item_issues; +my %info; + +foreach my $plugin (@issues_plugins) +{ + $info{$plugin} = { + issues => \%item_issues, + opts => { + list => $list, + }, + }; +} + +my $total = $list->count; +my $i = 0; + +print "Running plugins: ".join(', ', map { $_->get_name() } @issues_plugins)."\n" if( $noise > 0 ); + +$list->map(sub { + my( undef, undef, $item ) = @_; + foreach my $plugin ( @issues_plugins ) + { + $plugin->process_item_in_list( $item, $info{$plugin} ); + } + print sprintf("% 3s%%\r", sprintf("%d", $i++ / $total * 100)) if $noise > 1; +}); + +foreach my $plugin ( @issues_plugins ) +{ + print "Finishing plugin ".$plugin->get_name()."\n" if( $noise > 0 ); + $plugin->process_at_end( $info{$plugin} ); +} + +$i = 0; + +# Update the issues fields +print "Updating database\n" if $noise > 0; +$list->map(sub { + my( undef, undef, $item ) = @_; + + print sprintf("% 3s%%\r", sprintf("%d", $i++ / $total * 100)) if $noise > 1; + + my $value = $item_issues{$item->id}; + $value = [] if !defined $value; + for(@$value) + { + my $desc = $session->xml->to_string( $_->{description} ); + $session->xml->dispose( $_->{description} ); + $_->{description} = $desc; + } + # $item->set_item_issues( $value ); + _set_item_issues( $item, $value ); + $item->commit; +}); +print "Done updating database\n" if $noise > 0; + + +$list->dispose; + + +##################################### + +$session->terminate(); +exit; + +##################################### + +sub _set_item_issues($$) +{ + my( $self, $new_issues ) = @_; + + $new_issues = [] if !defined $new_issues; + + # tidy-up issues (should this be in the calling code?) + for(@$new_issues) + { + # default status to "discovered" + $_->{status} = "discovered" if !EPrints::Utils::is_set( $_->{status} ); + + # default item_issue_id to item_issue_type + $_->{id} = $_->{type} if !EPrints::Utils::is_set( $_->{id} ); + + # default timestamp to 'now' + $_->{timestamp} = EPrints::Time::get_iso_timestamp; + + # backwards compatibility + if( ref( $_->{description} ) ) + { + $_->{description} = $self->{session}->xhtml->to_xhtml( $_->{description} ); + } + } + + my %issues_map = map { $_->{id} => $_ } @$new_issues; + + my $current_issues = $self->value( "item_issues2" ); + $current_issues = [] if !defined $current_issues; + # clone, otherwise we can't detect changes + $current_issues = EPrints::Utils::clone( $current_issues ); + + # update existing issues + foreach my $issue (@$current_issues) + { + my $new_issue = delete $issues_map{$issue->{id}}; + if( defined $new_issue ) + { + # update description (may have changed) + $issue->{description} = $new_issue->{description} unless ! $new_issue->{description}; + $issue->{status} = $new_issue->{status} unless $issue->{status} && $issue->{status} eq "ignored"; + } + elsif( $issue->{status} eq "discovered" ) + { + ## $issue->{status} = "autoresolved"; + } + } + + # append all other new issues + foreach my $new_issue (@$new_issues) + { + next if !exists $issues_map{$new_issue->{id}}; + push @$current_issues, $new_issue; + } + + $self->set_value( "item_issues2", $current_issues ); # key difference +} + + + + +=head1 COPYRIGHT + +=for COPYRIGHT BEGIN + +Copyright 2000-2011 University of Southampton. + +=for COPYRIGHT END + +=for LICENSE BEGIN + +This file is part of EPrints L. + +EPrints is free software: you can redistribute it and/or modify it +under the terms of the GNU General Public License as published +by the Free Software Foundation, either version 3 of the License, or +(at your option) any later version. + +EPrints is distributed in the hope that it will be useful, but WITHOUT +ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public +License for more details. + +You should have received a copy of the GNU General Public License +along with EPrints. If not, see L. + +=for LICENSE END + From 01ed00542c5b36f95044514694d732f3ef71af41 Mon Sep 17 00:00:00 2001 From: Rory McNicholl Date: Tue, 30 Oct 2018 20:39:22 +0000 Subject: [PATCH 3/8] update epmi --- issues2.epmi | 261 ++++++++++++++++----------------------------------- 1 file changed, 82 insertions(+), 179 deletions(-) diff --git a/issues2.epmi b/issues2.epmi index 2b0362f..10492ca 100644 --- a/issues2.epmi +++ b/issues2.epmi @@ -1,278 +1,181 @@ - + issues2 529 - http://bazaar.eprints.org/id/epm/issues2 + http://git.dev.ac.uk/id/epm/issues2 - - 2895 - 1 + - - 13268 + document - 2895 - bin/issues_audit2 - text/x-perl - 87deafd3e54a0c883d6ca1fe5af15ed9 - MD5 - 7509 - 2017-10-13 14:19:05 - - - 13269 - document - 2895 - cfg.d/issues_search2.pl - text/plain - 9c04c101552254dee23fd11b0abc60d7 - MD5 - 1048 - 2017-10-13 14:19:05 - - - 13270 - document - 2895 - cfg.d/z_issues2.pl - text/plain - 31dee5faec23a2c04f1ab68133b5329a - MD5 - 4632 - 2017-10-13 14:19:05 - - - 13271 - document - 2895 - citations/eprint/brief_info.xml - application/xml - df14d03d6383349ca5856dac8d1d6f2a - MD5 - 268 - 2017-10-13 14:19:05 - - - 13272 - document - 2895 - citations/eprint/issue2.xml + lang/en/phrases/issues2.xml application/xml - 81ee034e23ba6890867b35aab1611ce2 + c037268a7ec6ce0169b88ae1f72ac889 MD5 - 546 - 2017-10-13 14:19:05 + 2464 - - 13273 + document - 2895 - epm/issues2/cfg/namedsets/issues2 - text/plain - 7ecc3e641a4e745668b163a0dce666da + static/images/epm/issues2.png + image/png + a584c5a781a2d6b668e71dbaf99c8d10 MD5 - 92 - 2017-10-13 14:19:05 + 120321 - - 13274 + document - 2895 - epm/issues2/cgi/issues2ack - text/plain - 94fbcc99b235b4e5a8fe7141565d7658 + static/javascript/auto/issues2.js + text/x-c + 4179fd9868b58d92c5f65e957e71b544 MD5 - 845 - 2017-10-13 14:19:05 + 2754 - - 13275 + document - 2895 - epm/issues2/cgi/issues2merge + static/style/auto/zzz_issues2.css text/plain - 0fa95077716d4e85cdd62f738115e682 - MD5 - 985 - 2017-10-13 14:19:05 - - - 13276 - document - 2895 - lang/en/phrases/issues2.xml - application/xml - c037268a7ec6ce0169b88ae1f72ac889 + 2b8cdb02cbb7e97b7968d05ac944affa MD5 - 2464 - 2017-10-13 14:19:05 + 405 - - 13277 + document - 2895 plugins/EPrints/Plugin/Issues2.pm - text/plain + text/x-c++ c15c3236e3e3e2156d31f6ba94c63c0b MD5 4122 - 2017-10-13 14:19:05 - - 13278 + document - 2895 plugins/EPrints/Plugin/Issues2/DuplicateDOI.pm text/plain 97a0fd0d126dc2c2b09c93a55e3ec04a MD5 505 - 2017-10-13 14:19:05 - - 13279 + document - 2895 - plugins/EPrints/Plugin/Issues2/DuplicateISBN.pm - text/plain - d8e56421562df21807013ceef79aac70 - MD5 - 503 - 2017-10-13 14:19:05 - - - 13280 - document - 2895 plugins/EPrints/Plugin/Issues2/DuplicateISSN.pm text/plain faf60b87b87a842081a2983e81e060be MD5 503 - 2017-10-13 14:19:05 - - 13281 + document - 2895 plugins/EPrints/Plugin/Issues2/DuplicateTitle.pm text/plain 7c95d856f329c84cfb3d4d0fbf428314 MD5 702 - 2017-10-13 14:19:05 - - 13282 + + document + plugins/EPrints/Plugin/Issues2/DuplicateISBN.pm + text/plain + d8e56421562df21807013ceef79aac70 + MD5 + 503 + + document - 2895 plugins/EPrints/Plugin/Screen/EPMC/Issues2.pm text/plain b9227c7f519d4bf131f18cdc06b10233 MD5 705 - 2017-10-13 14:19:05 - - 13283 + + document + plugins/EPrints/Plugin/Screen/Staff/IssueSearch2.pm + text/plain + 6827122a668e859f25b89418c126cc1f + MD5 + 2464 + + document - 2895 plugins/EPrints/Plugin/Screen/EPrint/Issues2.pm text/plain 06c09791d0b38cf54b7c1527d30585ab MD5 779 - 2017-10-13 14:19:05 - - 13284 + document - 2895 plugins/EPrints/Plugin/Screen/EPrint/Issues2Summary.pm text/plain 9062f6bba29f869c9cb6d898f824a1c5 MD5 6207 - 2017-10-13 14:19:05 - - 13285 + document - 2895 - plugins/EPrints/Plugin/Screen/Staff/IssueSearch2.pm + cfg.d/issues_search2.pl text/plain - 6827122a668e859f25b89418c126cc1f + 9c04c101552254dee23fd11b0abc60d7 MD5 - 2464 - 2017-10-13 14:19:05 + 1048 - - 13286 + document - 2895 - static/images/epm/issues2.png - image/png - a584c5a781a2d6b668e71dbaf99c8d10 + cfg.d/z_issues2.pl + text/x-c++ + 31dee5faec23a2c04f1ab68133b5329a MD5 - 120321 - 2017-10-13 14:19:05 + 4632 - - 13287 + document - 2895 - static/javascript/auto/issues2.js + epm/issues2/cgi/issues2merge text/plain - 4179fd9868b58d92c5f65e957e71b544 + 0fa95077716d4e85cdd62f738115e682 MD5 - 2754 - 2017-10-13 14:19:05 + 985 - - 13288 + document - 2895 - static/style/auto/zzz_issues2.css + epm/issues2/cgi/issues2ack text/plain - 2b8cdb02cbb7e97b7968d05ac944affa + 94fbcc99b235b4e5a8fe7141565d7658 MD5 - 405 - 2017-10-13 14:19:05 + 845 + + + document + epm/issues2/bin/issues_audit2 + text/x-perl + 87deafd3e54a0c883d6ca1fe5af15ed9 + MD5 + 7509 + + + document + epm/issues2/cfg/namedsets/issues2 + text/plain + 7ecc3e641a4e745668b163a0dce666da + MD5 + 92 - 529 - 1 - 1 text/plain text - en - public -
static/style/auto/zzz_issues2.css
+
epm/issues2/cfg/namedsets/issues2
install - - 2896 - 1 + - - 13289 + document - 2896 static/images/epm/issues2.png image/png a584c5a781a2d6b668e71dbaf99c8d10 MD5 120321 - 2017-10-13 14:19:05 - 529 - 2 - 2 - image/png image - en - public
static/images/epm/issues2.png
coverimage @@ -288,7 +191,7 @@ jb4@ecs.soton.ac.uk - 2017-10-13 14:19:05 + 2018-10-30 20:38:15 Duplicate Checker (Issues2) Helps repository administrators find records with duplicate metadata. An alternative to the existing Issues tool, with a simplified interface. From 4fb9c559f46bc7bddc85d6fd6cf62019fde0251a Mon Sep 17 00:00:00 2001 From: Rory McNicholl Date: Tue, 6 Nov 2018 01:53:22 +0000 Subject: [PATCH 4/8] update FindBin line to take in to account new location --- bin/issues_audit2 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bin/issues_audit2 b/bin/issues_audit2 index 204efa1..7767310 100755 --- a/bin/issues_audit2 +++ b/bin/issues_audit2 @@ -1,7 +1,7 @@ #!/usr/bin/perl -w use FindBin; -use lib "$FindBin::Bin/../../perl_lib"; +use lib "$FindBin::Bin/../../../perl_lib"; ###################################################################### # From 67c69c8c0f3793bdc2628a43aa7b4b0fc4a676f3 Mon Sep 17 00:00:00 2001 From: Rory McNicholl Date: Sat, 6 Apr 2019 06:24:44 +0100 Subject: [PATCH 5/8] ADding missing citation files --- lib/citations/eprint/brief_info.xml | 5 +++++ lib/citations/eprint/issue2.xml | 14 ++++++++++++++ 2 files changed, 19 insertions(+) create mode 100644 lib/citations/eprint/brief_info.xml create mode 100644 lib/citations/eprint/issue2.xml diff --git a/lib/citations/eprint/brief_info.xml b/lib/citations/eprint/brief_info.xml new file mode 100644 index 0000000..35a8709 --- /dev/null +++ b/lib/citations/eprint/brief_info.xml @@ -0,0 +1,5 @@ + + + +
, - + diff --git a/lib/citations/eprint/issue2.xml b/lib/citations/eprint/issue2.xml new file mode 100644 index 0000000..935da56 --- /dev/null +++ b/lib/citations/eprint/issue2.xml @@ -0,0 +1,14 @@ + + + + + . + + +
+ +
+ + + + From bcf7b1dbb561f400c8be404a381ec7344ebbb4b2 Mon Sep 17 00:00:00 2001 From: Rory McNicholl Date: Sat, 6 Apr 2019 06:31:18 +0100 Subject: [PATCH 6/8] updated epm(i) --- issues2.epm | 1697 ++++++++++++++++++++++++-------------------------- issues2.epmi | 28 +- 2 files changed, 831 insertions(+), 894 deletions(-) diff --git a/issues2.epm b/issues2.epm index f325783..06b553c 100644 --- a/issues2.epm +++ b/issues2.epm @@ -1,402 +1,18 @@ - + issues2 529 - http://bazaar.eprints.org/id/epm/issues2 + http://template.ulcc.ac.uk/id/epm/issues2 - - 2895 - 1 + - - 13268 + document - 2895 - bin/issues_audit2 - text/x-perl - 87deafd3e54a0c883d6ca1fe5af15ed9 - MD5 - 7509 - 2017-10-13 14:19:05 - IyEvdXNyL2Jpbi9wZXJsIC13Cgp1c2UgRmluZEJpbjsKdXNlIGxpYiAiJEZpbmRCaW46OkJpbi8u -Li8uLi9wZXJsX2xpYiI7CgojIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMj -IyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjIyMjCiMKIwojIyMjIyMjIyMjIyMjIyMjIyMjIyMj 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+c2JuCmR1cGxpY2F0ZV9pc3NuCmR1cGxpY2F0ZV90aXRsZQo= - 529 - 1 - 1 + lib text/plain text - en - public -
static/style/auto/zzz_issues2.css
+
epm/issues2/cfg/namedsets/issues2
install - - 2896 - 1 + - - 13289 + document - 2896 static/images/epm/issues2.png image/png a584c5a781a2d6b668e71dbaf99c8d10 MD5 120321 - 2017-10-13 14:19:05 iVBORw0KGgoAAAANSUhEUgAAASwAAAEsCAYAAAB5fY51AAAABGdBTUEAALGPC/xhBQAAACBjSFJN AAB6JgAAgIQAAPoAAACA6AAAdTAAAOpgAAA6mAAAF3CculE8AAAACXBIWXMAADXUAAA11AFeZeUI AAAKKmlUWHRYTUw6Y29tLmFkb2JlLnhtcAAAAAAAPHg6eG1wbWV0YSB4bWxuczp4PSJhZG9iZTpu @@ -5187,18 +5113,13 @@ qXJDMwUyBTJg5T6QKZApMDcUyIA1N58qNzRTIFPg33eo09nY8k0AAAAAAElFTkSuQmCC - 529 - 2 - 2 - image/png + lib image - en - public
static/images/epm/issues2.png
coverimage - 1.0.2 + 1.0.2.1 EPMC::Issues2 @@ -5209,7 +5130,7 @@ qXJDMwUyBTJg5T6QKZApMDcUyIA1N58qNzRTIFPg33eo09nY8k0AAAAAAElFTkSuQmCC jb4@ecs.soton.ac.uk - 2017-10-13 14:19:05 + 2019-04-06 05:27:29 Duplicate Checker (Issues2) Helps repository administrators find records with duplicate metadata. An alternative to the existing Issues tool, with a simplified interface. diff --git a/issues2.epmi b/issues2.epmi index 10492ca..dad6497 100644 --- a/issues2.epmi +++ b/issues2.epmi @@ -1,8 +1,8 @@ - + issues2 529 - http://git.dev.ac.uk/id/epm/issues2 + http://192.168.23.142/id/epm/issues2 @@ -126,6 +126,22 @@ MD5 4632 + + document + citations/eprint/brief_info.xml + application/xml + df14d03d6383349ca5856dac8d1d6f2a + MD5 + 268 + + + document + citations/eprint/issue2.xml + application/xml + 81ee034e23ba6890867b35aab1611ce2 + MD5 + 546 + document epm/issues2/cgi/issues2merge @@ -146,9 +162,9 @@ document epm/issues2/bin/issues_audit2 text/x-perl - 87deafd3e54a0c883d6ca1fe5af15ed9 + 20c761f65cfd0b11344995a0fa7fdbd0 MD5 - 7509 + 7512 document @@ -180,7 +196,7 @@ coverimage - 1.0.2 + 1.0.2.1 EPMC::Issues2 @@ -191,7 +207,7 @@ jb4@ecs.soton.ac.uk - 2018-10-30 20:38:15 + 2019-04-06 05:27:29 Duplicate Checker (Issues2) Helps repository administrators find records with duplicate metadata. An alternative to the existing Issues tool, with a simplified interface. From bcdce5b067bc3166905a5e7a22739b1ab797f0e6 Mon Sep 17 00:00:00 2001 From: Will Fyson Date: Mon, 13 Sep 2021 14:35:05 +0000 Subject: [PATCH 7/8] Remove current issues that refer to an eprint which no longer exists --- bin/issues_audit2 | 17 +++++++++++++---- 1 file changed, 13 insertions(+), 4 deletions(-) diff --git a/bin/issues_audit2 b/bin/issues_audit2 index 7767310..503cb61 100755 --- a/bin/issues_audit2 +++ b/bin/issues_audit2 @@ -2,7 +2,6 @@ use FindBin; use lib "$FindBin::Bin/../../../perl_lib"; - ###################################################################### # # @@ -141,6 +140,8 @@ sub _set_item_issues($$); #} my $ds = $session->get_archive()->get_dataset( 'eprint' ); +my %ids = map { $_ => 1 } @{$ds->search->ids}; + my $list; if( @ARGV ) { @@ -262,6 +263,8 @@ sub _set_item_issues($$) # clone, otherwise we can't detect changes $current_issues = EPrints::Utils::clone( $current_issues ); + my @updated_issues; + # update existing issues foreach my $issue (@$current_issues) { @@ -276,21 +279,27 @@ sub _set_item_issues($$) { ## $issue->{status} = "autoresolved"; } + + # check current issue still refers to an existing eprint + my $item_id = substr $issue->{id}, rindex( $issue->{id}, "_" )+1 ; + if( exists( $ids{$item_id} ) ) + { + push @updated_issues, $issue; + } } # append all other new issues foreach my $new_issue (@$new_issues) { next if !exists $issues_map{$new_issue->{id}}; - push @$current_issues, $new_issue; + push @updated_issues, $new_issue; } - $self->set_value( "item_issues2", $current_issues ); # key difference + $self->set_value( "item_issues2", \@updated_issues ); # key difference } - =head1 COPYRIGHT =for COPYRIGHT BEGIN From fd8a4f7e89192f0783648b04527c4d7ca4e63a40 Mon Sep 17 00:00:00 2001 From: Eleanor Dumbill Date: Fri, 2 May 2025 10:48:58 +0000 Subject: [PATCH 8/8] Removing ISSNs from issues check and updating bin script to remove previously found ISSNs as it is expected for these to be duplicate --- bin/issues_audit2 | 16 +++++++++++---- cfg/namedsets/issues2 | 1 - .../EPrints/Plugin/Issues2/DuplicateISSN.pm | 20 ------------------- 3 files changed, 12 insertions(+), 25 deletions(-) delete mode 100644 lib/plugins/EPrints/Plugin/Issues2/DuplicateISSN.pm diff --git a/bin/issues_audit2 b/bin/issues_audit2 index 7767310..c976b7c 100755 --- a/bin/issues_audit2 +++ b/bin/issues_audit2 @@ -261,9 +261,17 @@ sub _set_item_issues($$) $current_issues = [] if !defined $current_issues; # clone, otherwise we can't detect changes $current_issues = EPrints::Utils::clone( $current_issues ); + + # remove issns from current issues + my $cleaned_issues = []; + foreach my $issue (@$current_issues) + { + next if $issue->{type} eq 'duplicate_issn'; + push @$cleaned_issues, $issue; + } - # update existing issues - foreach my $issue (@$current_issues) + # update existing issues + foreach my $issue (@$cleaned_issues) { my $new_issue = delete $issues_map{$issue->{id}}; if( defined $new_issue ) @@ -282,10 +290,10 @@ sub _set_item_issues($$) foreach my $new_issue (@$new_issues) { next if !exists $issues_map{$new_issue->{id}}; - push @$current_issues, $new_issue; + push @$cleaned_issues, $new_issue; } - $self->set_value( "item_issues2", $current_issues ); # key difference + $self->set_value( "item_issues2", $cleaned_issues ); # key difference } diff --git a/cfg/namedsets/issues2 b/cfg/namedsets/issues2 index 3918ce1..9338d1e 100644 --- a/cfg/namedsets/issues2 +++ b/cfg/namedsets/issues2 @@ -1,5 +1,4 @@ # register issues2 plugins here duplicate_doi duplicate_isbn -duplicate_issn duplicate_title diff --git a/lib/plugins/EPrints/Plugin/Issues2/DuplicateISSN.pm b/lib/plugins/EPrints/Plugin/Issues2/DuplicateISSN.pm deleted file mode 100644 index 9582202..0000000 --- a/lib/plugins/EPrints/Plugin/Issues2/DuplicateISSN.pm +++ /dev/null @@ -1,20 +0,0 @@ -package EPrints::Plugin::Issues2::DuplicateISSN; -@ISA = ( "EPrints::Plugin::Issues2" ); - -sub new -{ - my( $class, %params ) = @_; - - my $self = $class->SUPER::new( %params ); - - $self->{type} = "duplicate_issn"; # internal name of issue, add to namedsets/issues2 - $self->{name} = "Duplicate ISSNs"; # human readable name - $self->{field} = "issn"; # field to test against - - $self->{fieldmap} = $self->{field} . "-map"; # internal cache name - $self->{disable} = 0; # enable this plugin - - return $self; -} - -1;