atacseq.py and chipseq.py should use functions from pypiper.ngstk. Specifically, this is in regard to bam_to_bigwig / bamToBigWig (though it may also apply to other pipeline-defined functions). At least from quick look over the version in chipseq.py, it seems like the only real difference is a hook for normalization factor. These functions should use a central version from ngstk once it parameterizes that.
databio/pypiper#52
atacseq.pyandchipseq.pyshould use functions frompypiper.ngstk. Specifically, this is in regard tobam_to_bigwig/bamToBigWig(though it may also apply to other pipeline-defined functions). At least from quick look over the version inchipseq.py, it seems like the only real difference is a hook for normalization factor. These functions should use a central version fromngstkonce it parameterizes that.databio/pypiper#52