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Update indigo to 1.39.0 (#167)
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‎rst/download/bingo.rst‎

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‎rst/download/bingo/bingo-1.39.0.rst‎

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Bingo 1.39.0
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------------
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The changelog is available `on this page <../../indigo/release-notes/indigo-1.39.0.html>`__
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.. list-table::
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:header-rows: 1
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:widths: 28 24 24 24
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* -
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- |image0| Linux
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- |image1| Windows
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- |image2| Mac OS
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* - Oracle
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-oracle-linux-x86_64.zip>`__
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-oracle-windows-msvc-x86_64.zip>`__
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- binaries upon request.
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* - PostgreSQL 17
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-17-linux-x86_64.zip>`__
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- \-
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-17-macos-x86_64.zip>`__
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* - PostgreSQL 16
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-16-linux-x86_64.zip>`__
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-16-windows-x86_64.zip>`__
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-16-macos-x86_64.zip>`__
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* - PostgreSQL 15
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-15-linux-x86_64.zip>`__
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-15-windows-x86_64.zip>`__
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-15-macos-x86_64.zip>`__
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* - PostgreSQL 14
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-14-linux-x86_64.zip>`__
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-14-windows-x86_64.zip>`__
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-14-macos-x86_64.zip>`__
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* - PostgreSQL 13
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-13-linux-x86_64.zip>`__
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-13-windows-x86_64.zip>`__
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-postgres-13-macos-x86_64.zip>`__
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* - Microsoft SQL Server
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- \-
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- `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.39.0/bingo-sqlserver-windows-latest-x86_64.zip>`__
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- \-
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`Source code on GitHub <http://github.com/epam/indigo>`__
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.. |image0| image:: ../../assets/Linux.png
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.. |image1| image:: ../../assets/Windows.png
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.. |image2| image:: ../../assets/AppleSZ.png

‎rst/download/indigo.rst‎

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‎rst/download/indigo/indigo-1.39.0.rst‎

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.. toctree::
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:hidden:
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:includehidden:
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../../indigo/release-notes/index.rst
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Indigo 1.39.0
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-------------
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Language Bindings
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~~~~~~~~~~~~~~~~~
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.. list-table::
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:header-rows: 0
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:stub-columns: 1
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* - |p-icon| Python
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- `indigo-python.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-python.zip>`__
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* - |j-icon| Java
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- `indigo-java.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-java.zip>`__
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* - |c-icon| .NET
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- `indigo-dotnet.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-dotnet.zip>`__
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* - |n-icon| Native Libraries in one archive
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- `indigo-native-shared-libs.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-native-shared-libs.zip>`__
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Platform/CPU Bindings
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~~~~~~~~~~~~~~~~~~~~~
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.. list-table::
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:header-rows: 1
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:stub-columns: 1
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* -
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- |image0| Linux
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- |image1| Windows
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- |image2| Mac OS
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* - |n-icon| Native Libraries x64
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- `indigo-libs-linux-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-libs-linux-x86_64.zip>`__
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- `indigo-libs-windows-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-libs-windows-x86_64.zip>`__
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- `indigo-libs-macos-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-libs-macos-x86_64.zip>`__
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* -
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-
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- `indigo-libs-windows-mingw-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-libs-windows-mingw-x86_64.zip>`__
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-
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* - |n-icon| Native Libraries ARM64
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- `indigo-libs-linux-aarch64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-libs-linux-aarch64.zip>`__
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- \-
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- `indigo-libs-macos-aarch64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-libs-macos-aarch64.zip>`__
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* - |n-icon| Native Libraries i386
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- \-
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- `indigo-libs-windows-i386.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-libs-windows-i386.zip>`__
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- \-
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* - |n-icon| Utilities x64
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- `indigo-utils-linux-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-utils-linux-x86_64.zip>`__
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- `indigo-utils-windows-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-utils-windows-x86_64.zip>`__
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- `indigo-utils-macos-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.39.0/indigo-utils-macos-x86_64.zip>`__
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Source code
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~~~~~~~~~~~
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`Source code zip <https://github.com/epam/Indigo/archive/indigo-1.39.0.zip>`__
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`Repository on GitHub <https://github.com/epam/Indigo>`__
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NuGet Repository
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~~~~~~~~~~~~~~~~
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Indigo .NET packages available at `Nuget <https://www.nuget.org/packages/Indigo.Net/>`__
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Just add ``Indigo.Net`` as a dependency into the project.
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PyPi package
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~~~~~~~~~~~~
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Indigo Python SDK can be found at `PyPi <https://pypi.org/project/epam.indigo/>`__
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One can install the Indigo library using *pip* utility
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.. code-block:: xml
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pip install epam.indigo
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.. |image0| image:: ../../assets/Linux.png
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.. |image1| image:: ../../assets/Windows.png
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.. |image2| image:: ../../assets/AppleSZ.png
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.. |image3| image:: ../../assets/globe.png
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.. |p-icon| image:: ../../assets/indigo/python-icon.png
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.. |j-icon| image:: ../../assets/indigo/java-icon.png
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.. |c-icon| image:: ../../assets/indigo/csharp-icon.png
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.. |n-icon| image:: ../../assets/indigo/native-icon.png
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.. |w-icon| image:: ../../assets/indigo/wasm-icon.png

‎rst/indigo/release-notes/index.rst‎

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‎rst/indigo/release-notes/indigo-1.39.0.md‎

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# Indigo 1.39.0
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Released 2026-02-20
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## Features
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* [3211](https://github.com/epam/Indigo/issues/3211) Introducing alignment of sense and antisense chains
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* [3273](https://github.com/epam/Indigo/issues/3273) Circular structures improvement - formation of fused rings
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* [3250](https://github.com/epam/Indigo/issues/3250) Alignment of sense and antisense strings in AxoLabs format
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* [3337](https://github.com/epam/Indigo/issues/3337) Bingo NoSQL tautomer substructure search support.
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## Bugfixes and improvements
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* [3282](https://github.com/epam/Indigo/issues/3282) Can't use indigo as a git submodule
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* [3297](https://github.com/epam/Indigo/issues/3297) Random '$$$$V2.0' empty return from conversion to HELM
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* [3306](https://github.com/epam/Indigo/issues/3306) Saving to HELM doesn't work for cycled structures consist of nucleosides
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* [3177](https://github.com/epam/Indigo/issues/3177) System can't calculate Calculate properties window values for Amino acids with query bonds
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* [3299](https://github.com/epam/Indigo/issues/3299) System should set Implicit H value for atoms if the comes without hydrogens from CDXML
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* [3343](https://github.com/epam/Indigo/issues/3343) Export to Mol v3000 works wrong for stereo bonds between monomers
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* [3369](https://github.com/epam/Indigo/issues/3369) Bingo NoSQL treat empty flags as NONE instead of ALL
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* [3363](https://github.com/epam/Indigo/issues/3363) The layout algorithm returns different coordinates on macOS for some tests
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* [3342](https://github.com/epam/Indigo/issues/3342) Export ot SVG and PNG doesn't work for stereo bond between monomers, system throws an error: pool: access to unused element
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* [3343](https://github.com/epam/Indigo/issues/3343) Export to Mol v3000 works wrong for stereo bonds between monomers
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* [3344](https://github.com/epam/Indigo/issues/3344) Export to SVG/PNG works wrong for stereo bonds between monomers
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**Full Changelog**: https://github.com/epam/Indigo/compare/indigo-1.38.0-rc.1...indigo-1.39.0

‎rst/newsfeed.rst‎

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Indigo and Bingo 1.39.0 released
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--------------------------------
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*20 February 2026*
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We are happy to announce that a new version 1.39.0 of Indigo toolkit and Bingo is released.
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* |indigo_1_39_0_notes|
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* |indigo_1_39_0_downloads|
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* |bingo_1_39_0_downloads|
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.. |indigo_1_39_0_notes| raw:: html
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<a href="indigo/release-notes/indigo-1.39.0.html" target="_blank">Release Notes</a>
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.. |indigo_1_39_0_downloads| raw:: html
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<a href="download/indigo/indigo-1.39.0.html" target="_blank">Indigo Downloads</a>
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.. |bingo_1_39_0_downloads| raw:: html
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<a href="download/bingo/bingo-1.39.0.html" target="_blank">Bingo Downloads</a>
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Indigo and Bingo 1.38.0 released
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