Skip to content

SELECT_TEST_SUIT.md

Latest commit

 

History

History
334 lines (281 loc) · 43.3 KB

SELECT_TEST_SUIT.md

File metadata and controls

334 lines (281 loc) · 43.3 KB

SELECT

AS General keywords A-D

AS in result

  1. Upload aql-conformance-ehrbase.org.v0.opt if not exist
  2. Create ehr
  3. Create composition aql-conformance-ehrbase.org.v0_contains.json
  4. Run Query 'Select SELECT c AS full FROM COMPOSITION c
  5. Check that the column c is named full in the result

DISTINCT General keywords A-D

  1. Upload aql-conformance-ehrbase.org.v0.opt if not exist
  2. Create ehr
  3. Create 2 x composition aql-conformance-ehrbase.org.v0_contains.json
  4. Run Query 'Select SELECT e/ehr_id/value AS full FROM EHR e contains COMPOSITION C
  5. Check Result 2 Rows
  6. Run Query 'Select SELECT DISTINCT e/ehr_id/value AS full FROM EHR e contains COMPOSITION C
  7. Check Result 1 Rows

Identified Path Feature A-D

Path to target Object

  1. Upload aql-conformance-ehrbase.org.v0.opt if not exist
  2. Create ehr
  3. Create composition aql-conformance-ehrbase.org.v0_contains.json
  4. Run Query 'Select SELECT c FROM COMPOSITION c
  5. Check return is the whole composition
  6. Run Query 'Select SELECT c/uid FROM COMPOSITION c
  7. Check return is a json of type _OBJECT_VERSION_ID
  8. Run Query 'Select SELECT c/uid/value FROM COMPOSITION c
  9. Check return is a String with the uid

Paths within same hierarchy level I

  1. Upload aql-conformance-ehrbase.org.v0.opt if not exist

  2. Create ehr

  3. Create composition aql-conformance-ehrbase.org.v0_contains.json

  4. Run Query Select p/time/value FROM POINT_EVENT p

  5. 4 Rows :

    p/time/value
    2022-02-03T04:05:06
    2023-02-03T04:05:06
    2024-02-03T04:05:06
    2025-02-03T04:05:06

Paths within same hierarchy level II

  1. Upload conformance-ehrbase.de.v0 if not exist
  2. Create ehr
  3. Create composition conformance_ehrbase.de.v0_max.json
  4. Run Query 'Select SELECT i/narrative/value FROM INSTRUCTION i
  5. Returns 1 Row "Human readable instruction narrative"

Paths within same hierarchy level III

  1. Upload conformance-ehrbase.de.v0 if not exist
  2. Create ehr
  3. Create composition conformance_ehrbase.de.v0_max.json
  4. Run Query 'Select SELECT c/start_time/value FROM EVENT_CONTEXT c
  5. Returns 1 Row "2021-12-21T14:19:31.649613+01:00"

Subobjects within locatable

  1. Upload conformance-ehrbase.de.v0 if not exist
  2. Create ehr
  3. Create composition conformance_ehrbase.de.v0_max.json
  4. Run Query 'Select SELECT c/setting FROM EVENT_CONTEXT c
  5. Returns 1 Row '''{ "_type": "DV_CODED_TEXT", "value": "other care", "defining_code": { "_type": "CODE_PHRASE", "terminology_id": { "_type": "TERMINOLOGY_ID", "value": "openehr" }'''

Path to new locatable

  1. Upload conformance-ehrbase.de.v0 if not exist
  2. Create ehr
  3. Create composition conformance_ehrbase.de.v0_max.json
  4. Run Query ' Select SELECT c/content[openEHR-EHR-SECTION.conformance_section.v0]/items[openEHR-EHR-ACTION.conformance_action_.v0] FROM COMPOSITION c
  5. Returns 1 Row json with type "ACTION"

Path from Entry to Data value

  1. Upload conformance-ehrbase.de.v0 if not exist
  2. Create ehr
  3. Create composition conformance_ehrbase.de.v0_max_v3.json
  4. Run Query 'Select SELECT {path} FROM OBSERVATION o [openEHR-EHR-OBSERVATION.conformance_observation.v0]
path result
o/data[at0001]/events[at0002]/data[at0003]/items[at0004]/value/value "Lorem ipsum", "Lorem ipsum2", "Lorem ipsum3"
o/data[at0001]/events[at0002]/data[at0003]/items[at0005]/value/value "term1", "term1", "term1"
o/data[at0001]/events[at0002]/data[at0003]/items[at0008]/value/units NULL, "mm", "mm"
o/data[at0001]/events[at0002]/data[at0003]/items[at0008]/value/magnitude NULL, 22.0, 80.2
o/data[at0001]/events[at0002]/data[at0003]/items[at0008]/null_flavour/value "unknown", NULL, NULL
o/data[at0001]/events[at0002]/data[at0003]/items[at0009]/value/numerator 42.0,40.0,20.0
o/data[at0001]/events[at0002]/data[at0003]/items[at0009]/value/denominator 3.0,2.0,2.0
o/data[at0001]/events[at0002]/data[at0003]/items[at0010]/value/magnitude 42,400,51
o/data[at0001]/events[at0002]/data[at0003]/items[at0011]/value/value 2022-02-03T04:05:06, 2023-02-03T04:05:06,2022-02-03T04:05:06
o/data[at0001]/events[at0002]/data[at0003]/items[at0012]/value/value 04:05:06,05:05:06,04:05:06
o/data[at0001]/events[at0002]/data[at0003]/items[at0013]/value/value 2022-02-03,2023-02-03,2022-02-03
o/data[at0001]/events[at0002]/data[at0003]/items[at0014]/value/value 1,2,1
o/data[at0001]/events[at0002]/data[at0003]/items[at0017]/value/value true,false,true
o/data[at0001]/events[at0002]/data[at0003]/items[at0018]/value/value "PT0S,"PT10S","PT6M40S"
o/data[at0001]/events[at0002]/data[at0003]/items[at0019]/value/id dev/null,dev/null2,dev/null3
o/data[at0001]/events[at0002]/data[at0003]/items[at0025]/value/value "ehr:/.","ehr:/.","ehr:/."
o/data[at0001]/events[at0002]/data[at0003]/items[at0026]/value/size 3 x 504903212
o/data[at0001]/events[at0002]/data[at0003]/items[at0027]/value/value 3 x "<html lang="en"><meta charset="UTF-8"><title>Hello World</title>Hello World!"
o/data[at0001]/events[at0002]/data[at0003]/items[at0028]/value/value 3 x " "https://www.example.com/sample""

Path from Entry to Data value in Cluster

  1. Upload conformance-ehrbase.de.v0 if not exist
  2. Create ehr
  3. Create composition conformance_ehrbase.de.v0_max_v3.json
  4. Run Query ' Select SELECT o/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.conformance_cluster.v0]/{path} FROM OBSERVATION o [openEHR-EHR-OBSERVATION.conformance_observation.v0]
  5. Run Query ' Select SELECT c/{path} FROM OBSERVATION o [openEHR-EHR-OBSERVATION.conformance_observation.v0] contains Cluster c [openEHR-EHR-CLUSTER.conformance_cluster.v0]
  6. Check that both have the same result
path result
items[at0005]/value/value "Lorem ipsum", "Lorem ipsum2", "Lorem ipsum3"
feeder_audit/originating_system_item_ids/id json with type FEEDER_AUDIT , NULL, NULL
feeder_audit/originating_system_item_ids/id "id1","id2", NULL, NULL

Null Value in select

  1. Upload conformance-ehrbase.de.v0 if not exist
  2. Create ehr
  3. Create composition conformance_ehrbase.de.v0_max_v3.json
  4. Run Query
path result
SELECT o/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.conformance_cluster.v0]/items[at0003]/value/value FROM OBSERVATION o [openEHR-EHR-OBSERVATION.conformance_observation.v0] "Lorem ipsum", "Lorem ipsum2"
SELECT o/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.conformance_cluster.v0]/items[at0003]/value/value,o/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.conformance_cluster.v0]/items[at0005]/value/value FROM OBSERVATION o [openEHR-EHR-OBSERVATION.conformance_observation.v0] "Lorem ipsum,Lorem ipsum", "Lorem ipsum2,Lorem ipsum3","null,Lorem ipsum2"
SELECT c/items[at0003]/value/value FROM OBSERVATION o [openEHR-EHR-OBSERVATION.conformance_observation.v0] contains Cluster c [openEHR-EHR-CLUSTER.conformance_cluster.v0] "Lorem ipsum", "Lorem ipsum2", null

Array valued paths

  1. Upload conformance-ehrbase.de.v0 if not exist

  2. Create ehr

  3. Create composition conformance_ehrbase.de.v0_array_valued.json

  4. Run Query 'Select SELECT {path} FROM COMPOSITION C CONTAINS OBSERVATION o

    path result
    c/context/participations/performer/name, c/context/participations/performer/external_ref/id/value "Dr. Marcus Johnson,199", "Dr. Stefan Mann,200"
    c/context/participations/performer/name, c/context/participations/performer/identifiers/id "Dr. Marcus Johnson,200","Dr. Marcus Johnson,201", "Dr. Stefan Mann,202","Dr. Stefan Mann,203"
    c/feeder_audit/original_content/value, c/feeder_audit/feeder_system_item_ids/id, c/feeder_audit/feeder_system_item_ids/type, c/feeder_audit/feeder_system_item_ids/issuer "Hello world!,id1,PERSON,issuer1" ,"Hello world!,id2,PERSON,issuer2"
    o/subject/identifiers/id "200", "123"
    o/other_participations/performer/name, o/other_participations/performer/external_ref/id "Dr. Marcus Johnson,199", "Lara Markham ,198"
    o/data[at0001]/events[at0002]/data[at0003]/items[at0004]/value/mappings/match, o/data[at0001]/events[at0002]/data[at0003]/items[at0004]/value/mappings/target/code_string "=,21794005", ">,21794007"
    o/data[at0001]/events[at0002]/data[at0003]/items[at0010]/value/other_reference_ranges/range/lower/magnitude, o/data[at0001]/events[at0002]/data[at0003]/items[at0010]/value/other_reference_ranges/range/upper/magnitude, o/data[at0001]/events[at0002]/data[at0003]/items[at0010]/value/other_reference_ranges/range/upper/meaning/value "8,10,high", "11,12,very high"

Primitives

Primitives in simple select

  1. Create EHR
  2. Run Query 'SELECT {primitive} from ehr'
  3. Check result is equal to {primitive}
{primitive}
"A"
1
1.1
3e102
7.51e10−9
TRUE
"2021-12-21T14:19:31.649613+01:00"
NULL

multi selects

  1. Upload aql-conformance-ehrbase.org.v0.opt if not exist
  2. Create ehr
  3. Save ehr id as {ehr_id}
  4. Create 2 times composition aql-conformance-ehrbase.org.v0_contains.json
  5. Save composition id as {c_uid1} and {c_uid2}
  6. Run Query ' Select SELECT e/ehr_id/value, c/uid/value, o/uid/value, p/time/value FROM EHR e CONTAINS COMPOSITION c CONTAINS OBSERVATION o CONTAINS POINT_EVENT p
  7. in any order 8 Rows
e/ehr_id/value c/uid/value o/uid/value p/time/value
{ehr_id} {c_uid1} d86702c2-15db-4d85-be51-af335cf43123 2022-02-03T04:05:06
{ehr_id} {c_uid1} d86702c2-15db-4d85-be51-af335cf43123 2023-02-03T04:05:06
{ehr_id} {c_uid1} 38065052-af1f-4b0b-b03d-9bda140a6edf 2024-02-03T04:05:06
{ehr_id} {c_uid1} 38065052-af1f-4b0b-b03d-9bda140a6edf 2025-02-03T04:05:06
{ehr_id} {c_uid2} d86702c2-15db-4d85-be51-af335cf43123 2022-02-03T04:05:06
{ehr_id} {c_uid2} d86702c2-15db-4d85-be51-af335cf43123 2023-02-03T04:05:06
{ehr_id} {c_uid2} 38065052-af1f-4b0b-b03d-9bda140a6edf 2024-02-03T04:05:06
{ehr_id} {c_uid2} 38065052-af1f-4b0b-b03d-9bda140a6edf 2025-02-03T04:05:06

Drill down along paths

Drill down EHR

  1. Create ehr using template test_data_sets/ehr/valid/000_ehr_status_with_other_details.json as {ehr_id}
  2. Save time_created/value as {ehr_time_created}.
  3. Save ehr_status/uid/value as {ehr_status_id}
  4. Run query Select SELECT {path} FROM EHR e
path result
e one row with type EHR
e/ehr_id/value one row with {ehr_id}
e/system_id one row with '''{"_type": "HIER_OBJECT_ID", "value": "local.ehrbase.org"}'''
e/system_id/value one row with "local.ehrbase.org"
e/time_created one row width '''{"_type": "DV_DATE_TIME", "value": {ehr_time_created}}'''
e/time_created/value one row with {ehr_time_created}
e/ehr_status one row with type EHR_STATUS
e/ehr_status/archetype_node_id one row with "openEHR-EHR-EHR_STATUS.generic.v1"
e/ehr_status/is_queryable one row width true
e/ehr_status/is_modifiable one row width true
e/ehr_status/name one row width '''{"_type": "DV_TEXT", "value": "EHR Status"}'''
e/ehr_status/name/value one row with "EHR Status"
e/ehr_status/other_details/name one row width '''{"_type": "DV_TEXT", "value": "family group"}'''
e/ehr_status/other_details/name/value one row width "family group"
e/ehr_status/other_details/item[at0001]/value/type one row width "FAMILY_GROUP_ID"
e/ehr_status/other_details/item[at0001]/value/id one row width "55175056"
e/ehr_status/other_details/item[at0001]/value/issuer one row width "MoH"
e/ehr_status/other_details/item[at0001]/value/assigner one row width "MoH"
e/ehr_status/other_details/item[at0001]/name/value one row width "family group id"
e/ehr_status/subject one row width '''{"_type": "PARTY_SELF", "external_ref": {"_type": "PARTY_REF", "namespace": "patients", "type": "PERSON", "id": { "_type": "GENERIC_ID", "value": "AUTO-GENRATED-BY-TEST", "scheme": "id_scheme"}}}'''
e/ehr_status/subject/external_ref one row width '''{"_type": "PARTY_REF", "namespace": "patients", "type": "PERSON", "id": {"_type": "GENERIC_ID", "value": "AUTO-GENRATED-BY-TEST", "scheme": "id_scheme"}}'''
e/ehr_status/subject/external_ref/namespace one row with "patients"
e/ehr_status/subject/external_ref/type one row with "PERSON"
e/ehr_status/subject/external_ref/id one row width '''{"_type": "GENERIC_ID", "value": "AUTO-GENRATED-BY-TEST", "scheme": "id_scheme"}'''
e/ehr_status/subject/external_ref/id/value one row with "AUTO-GENRATED-BY-TEST"
e/ehr_status/subject/external_ref/id/scheme one row with "id_scheme"
e/ehr_status/uid one row width '''{"_type": "OBJECT_VERSION_ID", "value": {ehr_status_id}}'''
e/ehr_status/uid/value one row width {ehr_status_id}

Drill down EHR_STATUS

  1. Create ehr using template test_data_sets/ehr/valid/000_ehr_status_with_other_details.json
  2. Save ehr_status/uid/value as {ehr_status_id}
  3. Run query Select SELECT {path} FROM EHR_STATUS es
path result
es one row with type EHR_STATUS
es/archetype_node_id one row with "openEHR-EHR-EHR_STATUS.generic.v1"
es/is_queryable one row width true
es/is_modifiable one row width true
es/name one row width '''{"_type": "DV_TEXT", "value": "EHR Status"}'''
es/name/value one row with "EHR Status"
es/other_details/name one row width '''{"_type": "DV_TEXT", "value": "family group"}'''
es/other_details/name/value one row width "family group"
es/other_details/item[at0001]/value/type one row width "FAMILY_GROUP_ID"
es/other_details/item[at0001]/value/id one row width "55175056"
es/other_details/item[at0001]/value/issuer one row width "MoH"
es/other_details/item[at0001]/value/assigner one row width "MoH"
es/other_details/item[at0001]/name/value one row width "family group id"
es/subject one row width '''{"_type": "PARTY_SELF", "external_ref": {"_type": "PARTY_REF", "namespace": "patients", "type": "PERSON", "id": { "_type": "GENERIC_ID", "value": "AUTO-GENRATED-BY-TEST", "scheme": "id_scheme"}}}'''
es/subject/external_ref one row width '''{"_type": "PARTY_REF", "namespace": "patients", "type": "PERSON", "id": {"_type": "GENERIC_ID", "value": "AUTO-GENRATED-BY-TEST", "scheme": "id_scheme"}}'''
es/subject/external_ref/namespace one row with "patients"
es/subject/external_ref/type one row with "PERSON"
es/subject/external_ref/id one row width '''{"_type": "GENERIC_ID", "value": "AUTO-GENRATED-BY-TEST", "scheme": "id_scheme"}'''
es/subject/external_ref/id/value one row with "AUTO-GENRATED-BY-TEST"
es/subject/external_ref/id/scheme one row with "id_scheme"
es/uid one row width '''{"_type": "OBJECT_VERSION_ID", "value": {ehr_status_id}}'''
es/uid/value one row width {ehr_status_id}

Drill down EVENT-CONTEXT

  1. Upload conformance-ehrbase.de.v0 if not exist
  2. Create ehr
  3. Create composition conformance_ehrbase.de.v0_max.json
  4. Run Query Select SELECT {path} FROM EVENT_CONTEXT c
path result
c one row with type EVENT_CONTEXT
c/start_time one row with '''{"_type": "DV_DATE_TIME","value": "2021-12-21T14:19:31.649613+01:00"}'''
c/start_time/value one row with "2021-12-21T14:19:31.649613+01:00"
c/end_time one row with '''{"_type": "DV_DATE_TIME","value": "2021-12-21T14:19:31.649613+01:00"}'''
c/end_time/value one row with "2021-12-21T14:19:31.649613+01:00"
c/location one row with "microbiology lab 2"
c/setting one row with '{ "_type": "DV_CODED_TEXT", "value": "other care", "defining_code": { "_type": "CODE_PHRASE", "terminology_id": { "_type": "TERMINOLOGY_ID", "value": "openehr" }, "code_string": "238" }'
c/setting/value one row with "other care"
c/setting/code_string one row with "238"
c/setting/defining_code one row with ' { "_type": "CODE_PHRASE", "terminology_id": { "_type": "TERMINOLOGY_ID", "value": "openehr" }'
c/setting/defining_code/terminology_id one row with ' { "_type": "TERMINOLOGY_ID", "value": "openehr" }'
c/setting/defining_code/terminology_id/value one row with "openehr"

Drill down OBSERVATION

  1. Upload conformance-ehrbase.de.v0 if not exist
  2. Create ehr
  3. Create composition conformance_ehrbase.de.v0_max.json
  4. Run Query Select SELECT {path} FROM OBSERVATION o [openEHR-EHR-OBSERVATION.conformance_observation.v0]
path result
o one row with type OBSERVATION
o/other_participations 2 rows with type PARTICIPATION
o/other_participations/function 2 rows with type DV_TEXT
o/other_participations/function/value 2 rows with requester, performer
o/links 1 row with { "type": { "_type": "DV_TEXT", "value": "problem" }, "target": { "value": "ehr://ehr.network/347a5490-55ee-4da9-b91a-9bba710f730e" }, "meaning": { "_type": "DV_TEXT", "value": "problem related note" } }
o/links/type 1 row with { "_type": "DV_TEXT", "value": "problem" }
o/links/type/value 1 row with "problem"
o/data[at0001] 1 row with name/value = "History"
o/data[at0001]/origin/value 1 row with 2022-02-03T04:05:06
o/data[at0001]/events[at0002] 3 row with type = 2x INTERVAL_EVENT, 1 x POINT_EVENT
o/data[at0001]/events[at0002] 3 row with type = 2x INTERVAL_EVENT, 1 x POINT_EVENT
o/data[at0001]/events[at0002]/time/value 3 row with 2022-02-03T04:05:06
o/data[at0001]/events[at0002]/width 3 row with 2 X times _type= DV_DURATION and one null
o/data[at0001]/events[at0002]/width/value 3 row with P30D, NULL, PT42H
o/data[at0001]/events[at0002]/sample_count 3 row with 5, NULL, NULL
o/data[at0001]/events[at0002]/data[at0003] 3 row with type ITEM_TREE
o/data[at0001]/events[at0002]/data[at0003]/items[at0004] 3 row with type Element
o/data[at0001]/events[at0002]/data[at0003]/items[at0004]/value 3 row with type DV_TEXT exactly one with mapping != null
o/data[at0001]/events[at0002]/data[at0003]/items[at0004]/value/value 3 row with "Lorem ipsum", "Lorem ipsum2", "Lorem ipsum3"
o/data[at0001]/events[at0002]/data[at0003]/items[at0004]/value/mappings 4 row with with 2 not null json and 2 null
o/data[at0001]/events[at0002]/data[at0003]/items[at0004]/value/mappings/target/code_string 4 row with with 21794005,21794000, null, null