fusca/NAMESPACE at main · edroaldo/fusca · GitHub

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# Generated by roxygen2: do not edit by hand

export("%>%")
export(AddAssay)
export(CreateCellComm)
export(CreateCellRouter)
export(FindVariableGenes)
export(Normalize)
export(activeSignaling)
export(addInfo)
export(buildGRN)
export(buildGRN2)
export(buildKNN)
export(calculateCentroids)
export(calculateDistanceMatrix)
export(calculateLigandReceptor)
export(calculateObservedMean)
export(calculatePvalue)
export(cellnetwork3)
export(cellnetworksPPI)
export(cellnetworksPPI2)
export(clusterGenesPseudotime)
export(clusterPermutation)
export(clusterPermutationSubcluster)
export(compareTwoGroups)
export(computeDC)
export(computeFC)
export(computePCA)
export(computeTSNE)
export(computeUMAP)
export(computeValue)
export(computeValueSubclusters)
export(convertID)
export(convertIDs)
export(correlationPseudotime)
export(createNetworksFromPaths)
export(createPPI)
export(createPaths)
export(createTFNetwork)
export(customSpace)
export(dotplot)
export(dotplotByMetadata)
export(dotplotSignatureScore)
export(filterCells)
export(findClusters)
export(findCurves)
export(findPaths)
export(findPathsRJava)
export(findSignatures)
export(findSubclusters)
export(find_curve)
export(findpaths.simple)
export(findpaths.simpleRJava)
export(graphClustering)
export(grnScoresHeatmap)
export(grnscores)
export(interactionmatrix)
export(pathwaycluster)
export(pathwayenrichment)
export(plotClusterHeatmap)
export(plotClusterProfiler)
export(plotClusters)
export(plotDRExpression)
export(plotDRExpression2)
export(plotEnrichR)
export(plotGenesInClusters)
export(plotIntegration)
export(plotInteractionMatrix2)
export(plotInteractionNetwork)
export(plotKNN)
export(plotPairDotplot)
export(plotPathHeatmap)
export(plotProportion)
export(plotProportion2)
export(plotReducedDimension)
export(plotRegulonDynamics)
export(plotSelectedClusters)
export(plotSignatureScore)
export(plotSignatureScoreDynamics)
export(plotSignaturesBoxplot)
export(plotSignaturesHeatmap)
export(plotSpatialClusters)
export(plotSpatialExpression)
export(plotSpatialScore)
export(plotSpatialSubclusters)
export(plotValue)
export(plotViolin)
export(plotbranch)
export(plotpaths)
export(plottr)
export(plottrajectories)
export(plottrajectory)
export(population.pairing)
export(predictCellCycle)
export(predictCellInteractions)
export(predictState)
export(processCurves)
export(processTrajectories)
export(rankGenesTranscriptionalClusters)
export(rankpaths)
export(read10X)
export(read10XImage)
export(regulatornetwork)
export(scaleData)
export(scoreGeneSets)
export(signaling2TF)
export(smoothDynamics)
export(sourcestargets)
export(summarize.flow)
export(testExport)
export(topGenes)
exportClasses(CellComm)
exportClasses(CellRouter)
exportClasses(FuscaAssay)
exportMethods(initialize)
import(Rcpp)
import(RcppEigen)
import(ggplot2)
import(mclust)
importClassesFrom(Matrix,dgCMatrix)
importFrom(magrittr,"%>%")
importMethodsFrom(methods,initialize)