cryVar/environment.yml at main · dylanpilz/cryVar · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
name: cryvar
channels:
  - bioconda
  - conda-forge
dependencies:
  - bzip2=1.0.8
  - c-ares=1.34.5
  - ca-certificates=2025.11.12
  - coreutils=9.5
  - covar=0.2.0
  - curl=8.17.0
  - git
  - htslib=1.21
  - ivar=1.4.4
  - k8=1.2
  - krb5=1.21.3
  - libcurl=8.17.0
  - libdeflate=1.22
  - libedit=3.1.20250104
  - libev=4.33
  - libexpat=2.7.3
  - libffi=3.5.2
  - liblzma=5.8.1
  - libmpdec=4.0.0
  - libnghttp2=1.67.0
  - libsqlite=3.51.0
  - libssh2=1.11.1
  - libzlib=1.3.1
  - minimap2=2.30
  - ncurses=6.5
  - nextflow=25.10.0
  - openjdk=23.0.2
  - openssl=3.6.0
  - pip=25.3
  - python=3.14.0
  - python_abi=3.14
  - readline=8.2
  - samtools=1.21
  - tk=8.6.13
  - tzdata=2025b
  - zstd=1.5.7
  - pip:
    - git+https://github.com/outbreak-info/python-outbreak-info.git@8f03f8e5efdef352abb88f76b40800547438a7e2
    - certifi==2025.11.12
    - charset-normalizer==3.4.4
    - idna==3.11
    - numpy==2.3.5
    - pandas==2.3.3
    - python-dateutil==2.9.0.post0
    - pytz==2025.2
    - requests==2.32.5
    - six==1.17.0
    - tzdata==2025.2
    - urllib3==2.5.0
    - tqdm==4.67.1
    - pyyaml==6.0.3
    - frozendict==2.4.7
    - pyarrow==22.0.0