From 9ca4f6bfa70c2bf54d4f9f9421384cc6bb240ce9 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 12:11:57 +0100 Subject: [PATCH 01/21] Updated to sphinx-argparse-cli>=1.21.3 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 3d60a28e..17d5004b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -83,7 +83,7 @@ dev = [ "sourcery>=1.43.0", "pre-commit>=4.5", "Sphinx>=9.0", - "sphinx-argparse-cli>=1.20.1", + "sphinx-argparse-cli>=1.21.3", "sphinx-autodoc-typehints>=3.6", "sphinxcontrib-mermaid>=2.0", "myst-parser>=5.0", From cbdcd7caf2e1f1a18b7a9e5b3759abe113ae7ccb Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 12:12:39 +0100 Subject: [PATCH 02/21] Updated to ruff>=0.15.7 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 17d5004b..0234f422 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -77,7 +77,7 @@ Changelog = "https://github.com/dnv-opensource/dictIO/blob/main/CHANGELOG.md" dev = [ "pytest>=9.0", "pytest-cov>=7.0", - "ruff>=0.15.1", + "ruff>=0.15.7", "pyright>=1.1.408", "mypy>=1.19.1", "sourcery>=1.43.0", From 2d7bd3e5dafaf74c7faf38063b4769fb540d1440 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 12:12:49 +0100 Subject: [PATCH 03/21] Updated to pytest-cov>=7.1 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 0234f422..9c5d77c0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -76,7 +76,7 @@ Changelog = "https://github.com/dnv-opensource/dictIO/blob/main/CHANGELOG.md" [dependency-groups] dev = [ "pytest>=9.0", - "pytest-cov>=7.0", + "pytest-cov>=7.1", "ruff>=0.15.7", "pyright>=1.1.408", "mypy>=1.19.1", From 1f7d35a55a18268dcfc780dc99ad9f582eb37c05 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 12:12:56 +0100 Subject: [PATCH 04/21] Updated to numpy>=2.4 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 9c5d77c0..9377ebc9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -62,7 +62,7 @@ classifiers = [ dependencies = [ "lxml>=6.0", "jsonschema>=4.26", - "numpy>=2.3", + "numpy>=2.4", ] [project.urls] From 7b70ca7d1abbce713394fcb1123e55731b2471c8 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 12:13:01 +0100 Subject: [PATCH 05/21] Updated to types-lxml>=2026.2 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 9377ebc9..d542c23d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -91,7 +91,7 @@ dev = [ "nbconvert>=7.17", "jupyter>=1.1.1", "jupyter-client>=8.8", - "types-lxml>=2026.1", + "types-lxml>=2026.2", ] [tool.uv] From 0c590c9e19dd8570d146a6d7d1560e9d36a23210 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 12:13:05 +0100 Subject: [PATCH 06/21] .pre-commit-config.yaml: Updated rev of ruff-pre-commit to v0.15.7 --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index c7ca41c9..c9d483c3 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,7 +9,7 @@ repos: - id: check-toml - id: check-merge-conflict - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.15.1 + rev: v0.15.7 hooks: - id: ruff-format - id: ruff-check From 2e8acf89bce1d25364757b158084818910340e9d Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 12:13:06 +0100 Subject: [PATCH 07/21] Updated CHANGELOG.md --- CHANGELOG.md | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 5eebe48e..af76da31 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,6 +8,15 @@ The changelog format is based on [Keep a Changelog](https://keepachangelog.com/e * -/- +### Dependencies +* .pre-commit-config.yaml: Updated rev of ruff-pre-commit to v0.15.7 +* Updated to numpy>=2.4 +* Updated to pytest-cov>=7.1 +* Updated to ruff>=0.15.7 +* Updated to sphinx-argparse-cli>=1.21.3 +* Updated to types-lxml>=2026.2 + + ## [0.4.3] - 2026-02-22 ### Solved From a06a33b7a3b504afe9b8e3a6ea47fb34751de40e Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 12:21:54 +0100 Subject: [PATCH 08/21] updated files in root folder with latest changes in python_project_template v0.2.10 --- .gitignore | 5 +---- CITATION.cff | 3 +++ LICENSE | 2 +- README.md | 15 +++++++++------ pyproject.toml | 11 ++++++++--- qa.bat | 5 ----- 6 files changed, 22 insertions(+), 19 deletions(-) delete mode 100644 qa.bat diff --git a/.gitignore b/.gitignore index 63f89273..71142fbd 100644 --- a/.gitignore +++ b/.gitignore @@ -91,7 +91,7 @@ ipython_config.py # It is generally recommended to include `uv.lock` in version control. # However, in case of collaboration, if having platform-specific dependencies or dependencies # having no cross-platform support, `uv` might install dependencies in one environment that don't work in another. -# In such case, `uv.lock` should be added to `.gitignore` +# In such case, `uv.lock` should be added to `.gitignore` (and, as such, excluded from version control). # uv.lock # PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm @@ -158,6 +158,3 @@ demos/**/*.nc # Cmake generated files CMakeUserPresets.json - -# modules -modules.txt diff --git a/CITATION.cff b/CITATION.cff index 643f5c51..71947a45 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -27,6 +27,9 @@ authors: email: seunghyeon.yoo@dnv.com website: 'https://www.linkedin.com/in/seunghyeon-yoo-3625173b/' keywords: + - dictIO + - dictParser + - dict license: MIT license-url: 'https://dnv-opensource.github.io/dictIO/LICENSE.html' url: 'https://dnv-opensource.github.io/dictIO/README.html' diff --git a/LICENSE b/LICENSE index 90b0cc37..8f54c6d1 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ MIT License -Copyright (c) 2024 [DNV](https://www.dnv.com) [open source](https://github.com/dnv-opensource) +Copyright (c) 2026 [DNV](https://www.dnv.com) [open source](https://github.com/dnv-opensource) Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/README.md b/README.md index f4e37d2e..fb9d87b3 100644 --- a/README.md +++ b/README.md @@ -24,7 +24,7 @@ Further, dictIO pip install dictIO ``` -## Usage Example +## Usage dictIO's core class is `SDict`, a generic data structure for serializable dictionaries.
`SDict` inherits from Python's builtin `dict`. It can hence be used transparently in any context where a `dict` or any other `MutableMapping` type is expected. @@ -110,7 +110,7 @@ uv self update ``` ### 2. Install Python -This project requires Python 3.10 or later.
+This project requires Python 3.11 or later.
If you don't already have a compatible version installed on your machine, the probably most comfortable way to install Python is through `uv`: ```sh uv python install @@ -134,15 +134,18 @@ cd dictIO ``` ### 4. Install dependencies -Run `uv sync` to create a virtual environment and install all project dependencies into it: +Run `uv sync -U` to create a virtual environment and install all project dependencies into it: ```sh -uv sync +uv sync -U ``` > **Note**: Using `--no-dev` will omit installing development dependencies. +> **Explanation**: The `-U` option stands for `--update`. It forces `uv` to fetch and install the latest versions of all dependencies, +> ensuring that your environment is up-to-date. + > **Note**: `uv` will create a new virtual environment called `.venv` in the project root directory when running -> `uv sync` the first time. Optionally, you can create your own virtual environment using e.g. `uv venv`, before running -> `uv sync`. +> `uv sync -U` the first time. Optionally, you can create your own virtual environment using e.g. `uv venv`, before running +> `uv sync -U`. ### 5. (Optional) Activate the virtual environment When using `uv`, there is in almost all cases no longer a need to manually activate the virtual environment.
diff --git a/pyproject.toml b/pyproject.toml index d542c23d..64f1393c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,7 +11,6 @@ only-include = [ ".coveragerc", ".editorconfig", ".pre-commit-config.yaml", - "manage.py", "pyproject.toml", "pytest.ini", "ruff.toml", @@ -23,6 +22,9 @@ packages = [ "src/dictIO", ] +[tool.hatch.metadata] +allow-direct-references = true + [project] name = "dictIO" version = "0.4.3" @@ -88,9 +90,8 @@ dev = [ "sphinxcontrib-mermaid>=2.0", "myst-parser>=5.0", "furo>=2025.12", - "nbconvert>=7.17", "jupyter>=1.1.1", - "jupyter-client>=8.8", + "nbconvert>=7.17", "types-lxml>=2026.2", ] @@ -136,6 +137,10 @@ include = [ "demos", ] exclude = [ + "**/node_modules", + "**/__pycache__", + "**/.*", + ".venv", "src/folder_to_be_excluded", ] diff --git a/qa.bat b/qa.bat deleted file mode 100644 index 915e0c58..00000000 --- a/qa.bat +++ /dev/null @@ -1,5 +0,0 @@ -uv run ruff format -uv run ruff check -uv run pyright -uv run mypy -uv run sourcery review . From c6c93f2335f2b641ecbd7d8516a932272a2fcab9 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 12:23:26 +0100 Subject: [PATCH 09/21] updated GitHub workflows with latest changes in python_project_template v0.2.10 --- .../workflows/_build_and_publish_documentation.yml | 4 ++-- .github/workflows/_build_package.yml | 2 +- .github/workflows/_code_quality.yml | 8 ++++---- .github/workflows/_test.yml | 3 ++- .github/workflows/_test_future.yml | 14 +++++++++++++- 5 files changed, 22 insertions(+), 9 deletions(-) diff --git a/.github/workflows/_build_and_publish_documentation.yml b/.github/workflows/_build_and_publish_documentation.yml index b3a69304..8df022f1 100644 --- a/.github/workflows/_build_and_publish_documentation.yml +++ b/.github/workflows/_build_and_publish_documentation.yml @@ -20,9 +20,9 @@ jobs: uses: astral-sh/setup-uv@v7 with: enable-cache: true - cache-dependency-glob: "uv.lock" + cache-dependency-glob: 'uv.lock' - name: Install the project - run: uv sync -U + run: uv sync --frozen - name: Print debugging information run: | echo "github.ref:" ${{github.ref}} diff --git a/.github/workflows/_build_package.yml b/.github/workflows/_build_package.yml index c48c122e..509ec20a 100644 --- a/.github/workflows/_build_package.yml +++ b/.github/workflows/_build_package.yml @@ -15,7 +15,7 @@ jobs: uses: astral-sh/setup-uv@v7 with: enable-cache: true - cache-dependency-glob: "uv.lock" + cache-dependency-glob: 'uv.lock' - name: Build source distribution and wheels run: uv build - name: Check build artifacts diff --git a/.github/workflows/_code_quality.yml b/.github/workflows/_code_quality.yml index 321bcb3e..6d7f696a 100644 --- a/.github/workflows/_code_quality.yml +++ b/.github/workflows/_code_quality.yml @@ -13,7 +13,7 @@ jobs: uses: astral-sh/setup-uv@v7 with: enable-cache: true - cache-dependency-glob: "uv.lock" + cache-dependency-glob: 'uv.lock' - name: Install the project run: uv sync -U - name: Run ruff format @@ -29,7 +29,7 @@ jobs: uses: astral-sh/setup-uv@v7 with: enable-cache: true - cache-dependency-glob: "uv.lock" + cache-dependency-glob: 'uv.lock' - name: Install the project run: uv sync -U - name: Run ruff check @@ -45,7 +45,7 @@ jobs: uses: astral-sh/setup-uv@v7 with: enable-cache: true - cache-dependency-glob: "uv.lock" + cache-dependency-glob: 'uv.lock' - name: Install the project run: uv sync -U - name: Run pyright @@ -61,7 +61,7 @@ jobs: uses: astral-sh/setup-uv@v7 with: enable-cache: true - cache-dependency-glob: "uv.lock" + cache-dependency-glob: 'uv.lock' - name: Install the project run: uv sync -U - name: Run mypy diff --git a/.github/workflows/_test.yml b/.github/workflows/_test.yml index 1850affb..3c34a4f1 100644 --- a/.github/workflows/_test.yml +++ b/.github/workflows/_test.yml @@ -7,6 +7,7 @@ jobs: name: Test (Python ${{ matrix.python }}, ${{ matrix.os }}) runs-on: ${{ matrix.os }} strategy: + fail-fast: true matrix: os: [ubuntu-latest, windows-latest, macos-latest] python: ['3.11', '3.12', '3.13', '3.14'] @@ -17,7 +18,7 @@ jobs: uses: astral-sh/setup-uv@v7 with: enable-cache: true - cache-dependency-glob: "uv.lock" + cache-dependency-glob: 'uv.lock' - name: Install the project run: uv sync -p ${{ matrix.python }} -U --no-dev - name: Run pytest diff --git a/.github/workflows/_test_future.yml b/.github/workflows/_test_future.yml index b3bb7fd9..80b10f0d 100644 --- a/.github/workflows/_test_future.yml +++ b/.github/workflows/_test_future.yml @@ -9,6 +9,7 @@ jobs: continue-on-error: true runs-on: ${{ matrix.os }} strategy: + fail-fast: true matrix: os: [ubuntu-latest, windows-latest] python: @@ -21,7 +22,18 @@ jobs: uses: astral-sh/setup-uv@v7 with: enable-cache: true - cache-dependency-glob: "uv.lock" + cache-dependency-glob: 'uv.lock' + - name: Remove Python upper version constraint from pyproject.toml + shell: pwsh + run: | + $File = Get-Item pyproject.toml + $Content = Get-Content $File -Raw + [regex]$RequiresPythonPattern = '(?=]{1,2}\s?\d+\.\d+\.?\d*\.?[\d\w]*\s?)(,\s?[<=]{1,2}\s?\d+\.?\d*\.?\d*\.?[\d\w]*\s?)?(")' + if ($Content -match $RequiresPythonPattern) { + $RequiresPythonFound = $Matches[0] + $RequiresPythonReplacement = $Matches[1] + $Matches[3] + $Content -Replace $RequiresPythonFound, $RequiresPythonReplacement | Set-Content $File -NoNewline + } - name: Install the project run: uv sync -p ${{ matrix.python.uvpy }} -U --no-dev - name: Run pytest From 95af5a5dbbc8482bfd0d501caa30a4c207450435 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 12:30:48 +0100 Subject: [PATCH 10/21] updated Visual Studio Code settings with latest changes in python_project_template v0.2.10 --- .vscode/launch.json | 44 +++++++++++++++++++++++++++++++++---------- .vscode/settings.json | 2 +- 2 files changed, 35 insertions(+), 11 deletions(-) diff --git a/.vscode/launch.json b/.vscode/launch.json index d32b4a9d..5b9466b1 100644 --- a/.vscode/launch.json +++ b/.vscode/launch.json @@ -19,7 +19,11 @@ "autoReload": { "enable": true }, + "subProcess": true, "justMyCode": true, + "redirectOutput": true, // pipe stdout/stderr to Debug Console + "showReturnValue": true, + "logToFile": false, // set true temporarily when diagnosing debugger issues }, { "name": "Python: Current File, cwd = file dir", @@ -28,10 +32,14 @@ "cwd": "${fileDirname}", // working dir = dir where current file is "program": "${file}", "console": "integratedTerminal", - "justMyCode": true, "autoReload": { "enable": true }, + "subProcess": true, + "justMyCode": true, + "redirectOutput": true, + "showReturnValue": true, + "logToFile": false, }, { "name": "Python: Current File, cwd = workspace root folder", @@ -43,55 +51,71 @@ "autoReload": { "enable": true }, + "subProcess": true, "justMyCode": true, + "redirectOutput": true, + "showReturnValue": true, + "logToFile": false, }, { "name": "dictParser test_dict", "type": "debugpy", "request": "launch", - "cwd": "${workspaceFolder}\\tests", - "program": "${workspaceFolder}\\src\\dictIO\\cli\\dictParser.py", + "cwd": "${workspaceFolder}\\tests\\test_working_directory", + "program": "${workspaceFolder}\\src\\dictIO\\cli\\dict_parser.py", "args": [ + "test_dict", "-v", - "test_dict" ], "console": "integratedTerminal", "autoReload": { "enable": true }, + "subProcess": true, "justMyCode": true, + "redirectOutput": true, + "showReturnValue": true, + "logToFile": false, }, { "name": "dictParser include\\initialConditions", "type": "debugpy", "request": "launch", - "cwd": "${workspaceFolder}\\tests", - "program": "${workspaceFolder}\\src\\dictIO\\cli\\dictParser.py", + "cwd": "${workspaceFolder}\\tests\\test_working_directory", + "program": "${workspaceFolder}\\src\\dictIO\\cli\\dict_parser.py", "args": [ + "include\\initialConditions", "-v", - "include\\initialConditions" ], "console": "integratedTerminal", "autoReload": { "enable": true }, + "subProcess": true, "justMyCode": true, + "redirectOutput": true, + "showReturnValue": true, + "logToFile": false, }, { "name": "dictParser test_dict", "type": "debugpy", "request": "launch", - "cwd": "${workspaceFolder}\\tests", - "program": "${workspaceFolder}\\src\\dictIO\\cli\\dictParser.py", + "cwd": "${workspaceFolder}\\tests\\test_working_directory", + "program": "${workspaceFolder}\\src\\dictIO\\cli\\dict_parser.py", "args": [ + "test_dict", "-v", - "test_dict" ], "console": "integratedTerminal", "autoReload": { "enable": true }, + "subProcess": true, "justMyCode": true, + "redirectOutput": true, + "showReturnValue": true, + "logToFile": false, }, ] } \ No newline at end of file diff --git a/.vscode/settings.json b/.vscode/settings.json index da6af3eb..fef74880 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -32,4 +32,4 @@ "mypy-type-checker.reportingScope": "custom", "mypy-type-checker.preferDaemon": true, "ruff.configurationPreference": "filesystemFirst", -} \ No newline at end of file +} From 9f237dde3e5a31509ea2d302ab80469f8fcf5d01 Mon Sep 17 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2026 12:41:27 +0100 Subject: [PATCH 12/21] updated files in /src with latest changes in python_project_template v0.2.10 --- src/dictIO/cli/dict_parser.py | 39 ++++++++++++++++++++++++++++------- 1 file changed, 31 insertions(+), 8 deletions(-) diff --git a/src/dictIO/cli/dict_parser.py b/src/dictIO/cli/dict_parser.py index cea320f1..727eb29b 100644 --- a/src/dictIO/cli/dict_parser.py +++ b/src/dictIO/cli/dict_parser.py @@ -3,8 +3,10 @@ import argparse import logging +import pprint import re from collections.abc import MutableSequence +from importlib import metadata from pathlib import Path from typing import Any, cast @@ -15,6 +17,15 @@ logger = logging.getLogger(__name__) +def _get_version() -> str: + """Return the installed package version, or a safe fallback if unavailable.""" + try: + return metadata.version("dictIO") + except metadata.PackageNotFoundError: + # Fallback when package metadata is not available (e.g. running from source) + return "dictIO (version unknown)" + + def _argparser() -> argparse.ArgumentParser: parser = argparse.ArgumentParser( prog="dictParser", @@ -135,6 +146,13 @@ def _argparser() -> argparse.ArgumentParser: required=False, ) + _ = parser.add_argument( + "-V", + "--version", + action="version", + version=_get_version(), + ) + return parser @@ -167,18 +185,23 @@ def main() -> None: output: str | None = args.output # Check whether source file exists - if not source_file.exists(): + if not source_file.is_file(): logger.error(f"dictParser.py: File {source_file} not found.") return + # Print the parsed commandline arguments for documentation and debugging purposes. + # The arguments will be split into one argument per line, if possible. + # If extracting a mapping from `args` fails, fall back to its string representation. + _indent: str = " " * 13 + try: + _arg_mapping = vars(args) + except TypeError: + _arg_mapping = {"args": str(args)} + _formatted_args = pprint.pformat(_arg_mapping, sort_dicts=True) + _indented_args = "\n".join(f"{_indent}{line}" for line in _formatted_args.splitlines()) logger.info( - f"Start dictParser.py with following arguments:\n" - f"\t source_file: \t\t{source_file}\n" - f"\t includes: \t\t\t{includes}\n" - f"\t order: \t\t\t\t{order}\n" - f"\t comments: \t\t\t{comments}\n" - f"\t scope: \t\t\t\t{scope}\n" - f"\t output: \t\t\t{output}" + "Start dictIO.py with following arguments:\n%s\n", + _indented_args, ) # Invoke API From 9c7e6ebea9210ca9126b4f00ee2cd803e9ecea98 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 12:50:53 +0100 Subject: [PATCH 13/21] updated files in /tests with latest changes in python_project_template v0.2.10 --- tests/.gitignore | 2 -- tests/__init__.py | 0 tests/cli/test_dictParser_cli.py | 19 ++++++++++++++++++- tests/conftest.py | 24 ++++++++++++++++-------- tests/test_working_directory/.gitignore | 3 +++ 5 files changed, 37 insertions(+), 11 deletions(-) delete mode 100644 tests/__init__.py create mode 100644 tests/test_working_directory/.gitignore diff --git a/tests/.gitignore b/tests/.gitignore index 0550ce80..7afaac4d 100644 --- a/tests/.gitignore +++ b/tests/.gitignore @@ -1,4 +1,2 @@ temp_* ~$temp* -parsed* -reread* \ No newline at end of file diff --git a/tests/__init__.py b/tests/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/tests/cli/test_dictParser_cli.py b/tests/cli/test_dictParser_cli.py index 1db98c59..34a34d50 100644 --- a/tests/cli/test_dictParser_cli.py +++ b/tests/cli/test_dictParser_cli.py @@ -9,7 +9,7 @@ import pytest from dictIO.cli import dict_parser -from dictIO.cli.dict_parser import _argparser, _validate_scope, main +from dictIO.cli.dict_parser import _argparser, _validate_scope, _get_version, main from dictIO.dict_parser import DictParser # *****Test commandline interface (CLI)************************************************************ @@ -103,6 +103,23 @@ def test_cli( raise TypeError +@pytest.mark.parametrize("flag", ["-V", "--version"]) +def test_cli_version( + flag: str, + monkeypatch: pytest.MonkeyPatch, + capsys: pytest.CaptureFixture[str], +): + # Prepare + monkeypatch.setattr(sys, "argv", ["dictIO", flag]) + parser = _argparser() + # Execute & Assert + with pytest.raises(SystemExit) as exc_info: + _ = parser.parse_args() + assert exc_info.value.code == 0 + captured = capsys.readouterr() + assert _get_version() in captured.out + + # *****Ensure the CLI correctly configures logging************************************************* diff --git a/tests/conftest.py b/tests/conftest.py index f46c86e2..9766fb89 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,3 +1,5 @@ +"""Test configuration and fixtures.""" + import logging import os from pathlib import Path @@ -6,26 +8,31 @@ import pytest -@pytest.fixture(scope="package", autouse=True) -def chdir() -> None: +@pytest.fixture(scope="session", autouse=True) +def chdir(): """ Fixture that changes the current working directory to the 'test_working_directory' folder. - This fixture is automatically used for the entire package. + This fixture is automatically used for the entire session. """ + original_cwd = Path.cwd() os.chdir(Path(__file__).parent.absolute() / "test_working_directory") + try: + yield + finally: + os.chdir(original_cwd) # reset to original working directory after tests -@pytest.fixture(scope="package", autouse=True) +@pytest.fixture(scope="session", autouse=True) def test_dir() -> Path: """ Fixture that returns the absolute path of the directory containing the current file. - This fixture is automatically used for the entire package. + This fixture is automatically used for the entire session. """ return Path(__file__).parent.absolute() -output_dirs: list[str] = [] -output_files: list[str] = [ +output_dirs = [] +output_files = [ "parsed.*", ] @@ -50,7 +57,8 @@ def _remove_output_dirs_and_files() -> None: for pattern in output_files: for file in Path.cwd().glob(pattern): _file = Path(file) - _file.unlink(missing_ok=True) + if _file.is_file(): + _file.unlink(missing_ok=True) @pytest.fixture(autouse=True) diff --git a/tests/test_working_directory/.gitignore b/tests/test_working_directory/.gitignore new file mode 100644 index 00000000..7c9d6f5b --- /dev/null +++ b/tests/test_working_directory/.gitignore @@ -0,0 +1,3 @@ +*test*.pdf +parsed* +reread* From 99198fc7e74234808b7251d32e81ca4bd27c4af4 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 12:57:29 +0100 Subject: [PATCH 14/21] Renamed command line script `src/dictIO/cli/dictParser.py` to ` src/dictIO/cli/__main__.py` --- .../{cli.dict_parser.rst => cli.__main__.rst} | 2 +- docs/source/cli.rst | 2 +- pyproject.toml | 2 +- src/dictIO/cli/{dict_parser.py => __main__.py} | 14 +++++++------- tests/cli/test_dictParser_cli.py | 6 +++--- 5 files changed, 13 insertions(+), 13 deletions(-) rename docs/source/{cli.dict_parser.rst => cli.__main__.rst} (56%) rename src/dictIO/cli/{dict_parser.py => __main__.py} (95%) diff --git a/docs/source/cli.dict_parser.rst b/docs/source/cli.__main__.rst similarity index 56% rename from docs/source/cli.dict_parser.rst rename to docs/source/cli.__main__.rst index d534b266..4440a6fd 100644 --- a/docs/source/cli.dict_parser.rst +++ b/docs/source/cli.__main__.rst @@ -1,3 +1,3 @@ .. sphinx_argparse_cli:: - :module: dictIO.cli.dict_parser + :module: dictIO.cli.__main__ :func: _argparser diff --git a/docs/source/cli.rst b/docs/source/cli.rst index 36643bab..77a0a331 100644 --- a/docs/source/cli.rst +++ b/docs/source/cli.rst @@ -4,4 +4,4 @@ CLI Documentation .. toctree:: :maxdepth: 3 - cli.dict_parser + cli.__main__ diff --git a/pyproject.toml b/pyproject.toml index 64f1393c..fc894e38 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -108,7 +108,7 @@ required-environments = [ [project.scripts] -dictParser = "dictIO.cli.dict_parser:main" +dictParser = "dictIO.cli.__main__:main" [tool.mypy] diff --git a/src/dictIO/cli/dict_parser.py b/src/dictIO/cli/__main__.py similarity index 95% rename from src/dictIO/cli/dict_parser.py rename to src/dictIO/cli/__main__.py index 727eb29b..dfc3f58b 100644 --- a/src/dictIO/cli/dict_parser.py +++ b/src/dictIO/cli/__main__.py @@ -175,7 +175,7 @@ def main() -> None: log_level_file: str = args.log_level configure_logging(log_level_console, log_file, log_level_file) - source_file = Path(args.dict) + dict_file = Path(args.dict) includes: bool = not args.ignore_includes mode: str = args.mode order: bool = args.order @@ -184,9 +184,9 @@ def main() -> None: scope: MutableSequence[Any] | None = _validate_scope(args.scope) output: str | None = args.output - # Check whether source file exists - if not source_file.is_file(): - logger.error(f"dictParser.py: File {source_file} not found.") + # Check whether dict file exists + if not dict_file.is_file(): + logger.error(f"dictParser: File {dict_file} not found.") return # Print the parsed commandline arguments for documentation and debugging purposes. @@ -206,7 +206,7 @@ def main() -> None: # Invoke API if DictParser.parse( - source_file=source_file, + source_file=dict_file, includes=includes, mode=mode, order=order, @@ -214,9 +214,9 @@ def main() -> None: scope=scope, output=output, ): - logger.info("dictParser.py finished successfully.\n") + logger.info("dictParser finished successfully.\n") else: - logger.error("dictParser.py finished with errors.\n") + logger.error("dictParser finished with errors.\n") def _validate_scope( diff --git a/tests/cli/test_dictParser_cli.py b/tests/cli/test_dictParser_cli.py index 34a34d50..ebd10fd9 100644 --- a/tests/cli/test_dictParser_cli.py +++ b/tests/cli/test_dictParser_cli.py @@ -8,8 +8,8 @@ import pytest -from dictIO.cli import dict_parser -from dictIO.cli.dict_parser import _argparser, _validate_scope, _get_version, main +from dictIO.cli import __main__ +from dictIO.cli.__main__ import _argparser, _get_version, _validate_scope, main from dictIO.dict_parser import DictParser # *****Test commandline interface (CLI)************************************************************ @@ -188,7 +188,7 @@ def fake_parse( ): pass - monkeypatch.setattr(dict_parser, "configure_logging", fake_configure_logging) + monkeypatch.setattr(__main__, "configure_logging", fake_configure_logging) monkeypatch.setattr(DictParser, "parse", fake_parse) # Execute if isinstance(expected, ConfigureLoggingArgs): From c30f9f86aaefe0685fcbad5f54479667722a4cfb Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 15:06:16 +0100 Subject: [PATCH 15/21] src/dictIO/cli/__main__.py: Added a module level ignore for ruff rule N999 (invalid module name) --- src/dictIO/cli/__main__.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/dictIO/cli/__main__.py b/src/dictIO/cli/__main__.py index dfc3f58b..d61e227f 100644 --- a/src/dictIO/cli/__main__.py +++ b/src/dictIO/cli/__main__.py @@ -1,4 +1,5 @@ #!/usr/bin/env python +# ruff: noqa: N999 """dictParser command line interface.""" import argparse @@ -200,7 +201,7 @@ def main() -> None: _formatted_args = pprint.pformat(_arg_mapping, sort_dicts=True) _indented_args = "\n".join(f"{_indent}{line}" for line in _formatted_args.splitlines()) logger.info( - "Start dictIO.py with following arguments:\n%s\n", + "Start dictParser with following arguments:\n%s\n", _indented_args, ) From 45307d4b3a3ac10ab4822389676adb68863b07fb Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 15:10:39 +0100 Subject: [PATCH 16/21] tests/conftest.py: Added type annotations to module level variables `output_dirs` and `output_files` (-> `: list[str]`) --- tests/conftest.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tests/conftest.py b/tests/conftest.py index 9766fb89..c25ead2b 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -31,8 +31,8 @@ def test_dir() -> Path: return Path(__file__).parent.absolute() -output_dirs = [] -output_files = [ +output_dirs: list[str] = [] +output_files: list[str] = [ "parsed.*", ] From 47d9c0d6e293e6343fa2f936384d20e9ba3b72c0 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 15:27:48 +0100 Subject: [PATCH 17/21] .vscode/launch.json: Corrected the CLI debug launch configuration --- .vscode/launch.json | 48 ++++----------------------------------------- 1 file changed, 4 insertions(+), 44 deletions(-) diff --git a/.vscode/launch.json b/.vscode/launch.json index 5b9466b1..9795a060 100644 --- a/.vscode/launch.json +++ b/.vscode/launch.json @@ -58,53 +58,13 @@ "logToFile": false, }, { - "name": "dictParser test_dict", + "name": "dictParser test_dictParser_dict", "type": "debugpy", "request": "launch", "cwd": "${workspaceFolder}\\tests\\test_working_directory", - "program": "${workspaceFolder}\\src\\dictIO\\cli\\dict_parser.py", + "program": "${workspaceFolder}\\src\\dictIO\\cli\\__main__.py", "args": [ - "test_dict", - "-v", - ], - "console": "integratedTerminal", - "autoReload": { - "enable": true - }, - "subProcess": true, - "justMyCode": true, - "redirectOutput": true, - "showReturnValue": true, - "logToFile": false, - }, - { - "name": "dictParser include\\initialConditions", - "type": "debugpy", - "request": "launch", - "cwd": "${workspaceFolder}\\tests\\test_working_directory", - "program": "${workspaceFolder}\\src\\dictIO\\cli\\dict_parser.py", - "args": [ - "include\\initialConditions", - "-v", - ], - "console": "integratedTerminal", - "autoReload": { - "enable": true - }, - "subProcess": true, - "justMyCode": true, - "redirectOutput": true, - "showReturnValue": true, - "logToFile": false, - }, - { - "name": "dictParser test_dict", - "type": "debugpy", - "request": "launch", - "cwd": "${workspaceFolder}\\tests\\test_working_directory", - "program": "${workspaceFolder}\\src\\dictIO\\cli\\dict_parser.py", - "args": [ - "test_dict", + "test_dictParser_dict", "-v", ], "console": "integratedTerminal", @@ -118,4 +78,4 @@ "logToFile": false, }, ] -} \ No newline at end of file +} From e8c5f48ddf68d2b24630e92ee6efc149ad298166 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 15:29:53 +0100 Subject: [PATCH 18/21] updated CHANGELOG.md --- CHANGELOG.md | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index af76da31..6e3df727 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,6 +8,13 @@ The changelog format is based on [Keep a Changelog](https://keepachangelog.com/e * -/- +## [0.4.4] - 2026-03-26 + +### Changed +* Renamed command line script `src/dictIO/cli/dictParser.py` to ` src/dictIO/cli/__main__.py` +* VS Code Settings: + * .vscode/launch.json: Corrected the CLI debug launch configuration + ### Dependencies * .pre-commit-config.yaml: Updated rev of ruff-pre-commit to v0.15.7 * Updated to numpy>=2.4 @@ -503,7 +510,8 @@ This removes the need to manually add /src to the PythonPath environment variabl * Added support for Python 3.10 -[unreleased]: https://github.com/dnv-opensource/dictIO/compare/v0.4.3...HEAD +[unreleased]: https://github.com/dnv-opensource/dictIO/compare/v0.4.4...HEAD +[0.4.4]: https://github.com/dnv-opensource/dictIO/compare/v0.4.3...v0.4.4 [0.4.3]: https://github.com/dnv-opensource/dictIO/compare/v0.4.2...v0.4.3 [0.4.2]: https://github.com/dnv-opensource/dictIO/compare/v0.4.1...v0.4.2 [0.4.1]: https://github.com/dnv-opensource/dictIO/compare/v0.4.0...v0.4.1 From 7bdba541d32ad70241f5a2765d23c6988a35bad6 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 15:32:57 +0100 Subject: [PATCH 19/21] Bumped version number to 0.4.4 --- CITATION.cff | 54 ++++++++++++++++++++++----------------------- docs/source/conf.py | 2 +- pyproject.toml | 2 +- 3 files changed, 29 insertions(+), 29 deletions(-) diff --git a/CITATION.cff b/CITATION.cff index 71947a45..325a9543 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -1,35 +1,35 @@ title: dictIO -version: 0.4.3 +version: 0.4.4 abstract: >- - Python package to read, write and manipulate dictionary text files. - Supports dictIOs native file format, as well as JSON, XML and OpenFOAM. + Python package to read, write and manipulate dictionary text files. + Supports dictIOs native file format, as well as JSON, XML and OpenFOAM. type: software authors: - - name: DNV SE - address: 'Brooktorkai 18' - post-code: '20457' - city: Hamburg - country: DE - website: 'https://www.dnv.com/' - - given-names: Frank - family-names: Lumpitzsch - affiliation: DNV - email: frank.lumpitzsch@dnv.com - website: 'https://www.linkedin.com/in/frank-lumpitzsch-23013196/' - - given-names: Claas - family-names: Rostock - affiliation: DNV - email: claas.rostock@dnv.com - website: 'https://www.linkedin.com/in/claasrostock/?locale=en_US' - - given-names: Seunghyeon - family-names: Yoo - affiliation: DNV - email: seunghyeon.yoo@dnv.com - website: 'https://www.linkedin.com/in/seunghyeon-yoo-3625173b/' + - name: DNV SE + address: 'Brooktorkai 18' + post-code: '20457' + city: Hamburg + country: DE + website: 'https://www.dnv.com/' + - given-names: Frank + family-names: Lumpitzsch + affiliation: DNV + email: frank.lumpitzsch@dnv.com + website: 'https://www.linkedin.com/in/frank-lumpitzsch-23013196/' + - given-names: Claas + family-names: Rostock + affiliation: DNV + email: claas.rostock@dnv.com + website: 'https://www.linkedin.com/in/claasrostock/?locale=en_US' + - given-names: Seunghyeon + family-names: Yoo + affiliation: DNV + email: seunghyeon.yoo@dnv.com + website: 'https://www.linkedin.com/in/seunghyeon-yoo-3625173b/' keywords: - - dictIO - - dictParser - - dict + - dictIO + - dictParser + - dict license: MIT license-url: 'https://dnv-opensource.github.io/dictIO/LICENSE.html' url: 'https://dnv-opensource.github.io/dictIO/README.html' diff --git a/docs/source/conf.py b/docs/source/conf.py index 2e285275..0075d73e 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -25,7 +25,7 @@ author = "Frank Lumpitzsch, Claas Rostock, Seunghyeon Yoo" # The full version, including alpha/beta/rc tags -release = "0.4.3" +release = "0.4.4" # -- General configuration --------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration diff --git a/pyproject.toml b/pyproject.toml index fc894e38..3e772280 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,7 +27,7 @@ allow-direct-references = true [project] name = "dictIO" -version = "0.4.3" +version = "0.4.4" description = "Python package to read, write and manipulate dictionary text files. Supports dictIOs native file format, as well as JSON, XML and OpenFOAM." readme = "README.md" requires-python = ">= 3.11" From 2293ef574b1605658e9cadfc0240d1c5884078c8 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 15:59:25 +0100 Subject: [PATCH 20/21] updated uv.lock --- uv.lock | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/uv.lock b/uv.lock index b6cca544..dc3911c3 100644 --- a/uv.lock +++ b/uv.lock @@ -530,7 +530,7 @@ wheels = [ [[package]] name = "dictio" -version = "0.4.3" +version = "0.4.4" source = { editable = "." } dependencies = [ { name = "jsonschema" }, From 1c213231af44e91163c37414e9f18467bfb82db4 Mon Sep 17 00:00:00 2001 From: Claas Date: Thu, 26 Mar 2026 18:52:40 +0100 Subject: [PATCH 21/21] updated CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 6e3df727..5e3aca24 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -14,6 +14,7 @@ The changelog format is based on [Keep a Changelog](https://keepachangelog.com/e * Renamed command line script `src/dictIO/cli/dictParser.py` to ` src/dictIO/cli/__main__.py` * VS Code Settings: * .vscode/launch.json: Corrected the CLI debug launch configuration +* Updated code base with latest changes in python_project_template v0.2.10 ### Dependencies * .pre-commit-config.yaml: Updated rev of ruff-pre-commit to v0.15.7