Update README.md

Author: devonorourke

README.md

@@ -1,7 +1,27 @@
 # tidybug
 Methods and data describing filtering COI datasets and database construction.
 
+**Paper link forthcoming (open access)**
+
 Additional information related to this project:
 - NCBI BioProject information available at  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA518082
 - SRA data available at: https://www.ncbi.nlm.nih.gov/sra/PRJNA518082
 - Large database files are available at: https://osf.io/k3eh6/
+
+# Documentation
+See [the docs folder of this repo](https://github.com/devonorourke/tidybug/tree/master/docs) for information on how each part of the project was performed:
+  - [wet bench work](https://github.com/devonorourke/tidybug/blob/master/docs/wetbench_workflow.md)
+  - [sequence filtering](https://github.com/devonorourke/tidybug/blob/master/docs/sequence_filtering.md)
+  - [diversity analyses](https://github.com/devonorourke/tidybug/blob/master/docs/sequence_and_diversity_analyses.md)
+  - [database construction](https://github.com/devonorourke/tidybug/blob/master/docs/database_construction.md)
+  - [database comparisons](https://github.com/devonorourke/tidybug/blob/master/docs/database_analyses.md)
+  - [classifier comparisons](https://github.com/devonorourke/tidybug/blob/master/docs/classification_analyses.md)
+  
+# Scripts
+Note links are embedded within each [document](https://github.com/devonorourke/tidybug/tree/master/docs) to point you to the particular R or shell scripts used to complete the described action. Scripts are available at [this directory](https://github.com/devonorourke/tidybug/tree/master/scripts) if you want to dive right into the code itself.
+
+# Supplementary materials
+Supplementary images and tables referred to in the manuscript are hosted at this repo as individual files instead of a single text document. You can find all of this infromation at [this directory](https://github.com/devonorourke/tidybug/tree/master/SupplementaryFiguresTables).
+
+# Main text figures and table
+Individual figures used in the main manuscript are hosted [here]. Please contact me at devon@outermostlab.com if you would like to use these images for your own purposes.