Merge pull request #14 from deepflame-ai/cleanup-remove-legacy-shims

Remove legacy compatibility packages and finalize canonical package layout

Author: xiao312

AGENTS.md

@@ -20,7 +20,7 @@
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
     "\n",
-    "from dfode_kit.df_interface import (\n",
+    "from dfode_kit.cases import (\n",
     "    OneDFreelyPropagatingFlameConfig,\n",
     "    setup_one_d_flame_case,\n",
     "    df_to_h5,\n",
@@ -32,7 +32,7 @@
     "    label_npy,\n",
     "    integrate_h5,\n",
     ")\n",
-    "from dfode_kit.dfode_core.model.mlp import MLP\n",
+    "from dfode_kit.models.mlp import MLP\n",
     "from dfode_kit.utils import BCT\n",
     "\n",
     "DFODE_ROOT = os.environ['DFODE_ROOT']"