Data files for Bar Harbor Short Course
Below is information on the files in this repo that we will use for the Bar Harbor Short Course for Medical Genetics
ShortCourseParticipantInfo.md : Markdown file to collect participant info
ShortCourseParticipantInfo.docx : Word file created from markdown file
In the excel directory:
ref_chr7.tsv : ad hoc tab separated file of gene data
ref_chr7_GRCh37.p10.gff3: GFF3 formatted gene data
modified_LMM_NA12878_PanCardiomyopathy.vcf: variant file in VCF format
In the seqID directory:
ref_chr7_test1.bed: Bed file using NCBI seqIDs
ref_chr7_test2.bed: Bed file using Ensembl style seqIDs
ref_chr7_test3.bed: Bed file using UCSC style seqIDs
ucsc_testGenes.bed: Bed file of genes in GRCh37 coordinates with no track directives
ucsc_testGenes_test2.bed: Bed file of genes in GRCh37 coordinates with a track directive
In the remap directory: nstd37_ISCA.GRCh37.remap.var.germline.ucsc.gvf: variant file containing CNVs in GVF format