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AGR encoding (Correctness) - Have set of extensions that we need to review and discuss AGR for mouse and rat genes (phenotype, disease) (Data Completeness) TOPMed (Data Completeness - meaning phenotypic info described in use cases, from subjects to files, including individual whole genome sequence files and derived results) rdflib parsing speed - split JSON into smaller files if necessary - Covers #8 from Rob’s list
Overdue by 7 year(s)•Due by September 14, 2018•1/1 issues closedGTEx (Data Completeness - meaning phenotypic info described in use cases, from subjects to files, including individual whole genome sequence files and derived results)
Overdue by 7 year(s)•Due by September 7, 2018•1/1 issues closedContext file issue(s) (e.g., derivesFrom, characteristics, extraProperties) (Correctness) - Will create additional needed context files, then later get them officially into obo.foundry or whatever is the correct place - Covers 1, 2, 3, 6 from Rob’s list Linking to file level in DATS (Completeness) - Decided to provide ancillary DATS file that specifies the link between Material and file Licensing/consent groups (Completeness) Represent list of all study metadata variables for each dataset (Data Completeness) Write sparql queries for round trip validation - Covers 5, 7 from Rob’s list Adjust top-level structures of datasets so they are same between GTEx and TOPMed - Covers #4 from Rob’s list Remove current (incorrect) AGR structure
Overdue by 7 year(s)•Due by August 23, 2018•1/1 issues closed