differences for PR #348

Author: actions-user

09-challenges.md

@@ -246,3 +246,12 @@ def count_colonies_enhanced(image_filename, sigma=1.0, min_colony_size=10, conne
 - These methods are useful for many scientific problems, especially those involving morphometrics.
 
 ::::::::::::::::::::::::::::::::::::::::::::::::::
+
+
+:::::::::::::::::::::::::::::::::::::::: discussion
+
+## Where to go from here?
+
+Take a look at our [curated list of resources](further-reading.md) for further publicly available courses, resources and scientific literature around image processing and more.
+
+::::::::::::::::::::::::::::::::::::::::::::::::::

further-reading.md

@@ -0,0 +1,26 @@
+---
+title: Further Reading
+permalink: /reading/
+---
+
+## Where to go from here
+
+- [Scikit-image YouTube tutorials](https://www.youtube.com/playlist?list=PLBKcU7Ik-ir9Fi_hM_A6_U2UTpm7ACUtl)
+- [Introduction to Bioimage Analysis by Pete Bankhead](https://bioimagebook.github.io/index.html)
+- [Bio-image Analysis Notebooks by Robert Haase](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/intro.html)
+- [Introduction to artificial neural networks in Python](https://carpentries-incubator.github.io/machine-learning-neural-python/index.html)
+- [Building Better Research Software](https://carpentries-incubator.github.io/better-research-software/)
+- [Data Handling and Management Training](https://carpentries-incubator.github.io/Data-Management-Training/)
+
+## Where to find more help
+
+- [Image.sc Forum](https://image.sc/)
+- [NFDI4BioImage Training Materials collection](https://nfdi4bioimage.github.io/training/readme.html)
+
+## Scientific Literature
+
+- [Checklist for publishing images and analyses ](https://www.nature.com/articles/s41592-023-01987-9)
+- [REMBI: Recommended Metadata for Biological Images](https://www.nature.com/articles/s41592-021-01166-8)
+- ["Twenty questions": a schema for a set of questions to guide analyses](https://www.nature.com/articles/s41592-023-01919-7)
+- ["From cells to pixels: A decision tree for designing bioimage analysis pipelines"](https://onlinelibrary.wiley.com/doi/10.1111/jmi.70021)
+

md5sum.txt

@@ -11,10 +11,11 @@
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 "learners/edge-detection.md" "fdbcee7436e104e6587e1cb40cd37d18" "site/built/edge-detection.md" "2023-08-16"
+"learners/further-reading.md" "aeea4e06d3d44d0e26fe52781548de83" "site/built/further-reading.md" "2025-12-05"
 "learners/prereqs.md" "7ca883d3d01d18c98ce7524ed297e56c" "site/built/prereqs.md" "2023-07-26"
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 "learners/setup.md" "36ceef28a0c5cbd8e7f924dc0d151893" "site/built/setup.md" "2025-05-19"