Merge pull request #290 from darwin-eu-dev/rc

Rc

Author: mvankessel-EMC

CRAN-SUBMISSION

@@ -1,3 +1,3 @@
-Version: 3.0.0
-Date: 2025-02-03 10:38:04 UTC
-SHA: de6f463680054f2ec155ebf1041a1c7b7a4fa00a
+Version: 3.0.1
+Date: 2025-03-10 15:18:11 UTC
+SHA: 9ecf4d5d415e535b010bec87896dfede0772640d

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: TreatmentPatterns
 Type: Package
 Title: Analyzes Real-World Treatment Patterns of a Study Population of Interest
-Version: 3.0.0
+Version: 3.0.1
 Authors@R: 
     c(person("Aniek", "Markus", , role = c("aut"), comment = c(ORCID = "0000-0001-5779-4794")),
       person("Maarten", "van Kessel", email = "m.l.vankessel@erasmusmc.nl", role = c("cre"), comment = c(ORCID = "0009-0006-8832-6030")))
@@ -27,8 +27,6 @@ Imports:
     sunburstR,
     networkD3,
     htmlwidgets,
-    shiny,
-    shinydashboard,
     ggplot2,
     dbplyr,
     jsonlite
@@ -61,13 +59,6 @@ Config/testthat/parallel: true
 Roxygen: list(markdown = TRUE)
 Collate: 
     'CDMInterface.R'
-    'ShinyModule.R'
-    'CharacterizationPlots.R'
-    'InputHandler.R'
-    'InteractivePlots.R'
-    'SankeyDiagram.R'
-    'ShinyApp.R'
-    'SunburstPlot.R'
     'TreatmentPatterns-package.R'
     'TreatmentPatternsResults.R'
     'attrition.R'
@@ -78,4 +69,5 @@ Collate:
     'executeTreatmentPatterns.R'
     'export.R'
     'getResultsDataModelSpecification.R'
+    'ggSunburst.R'
     'plotEventDuration.R'

NAMESPACE

@@ -1,31 +1,23 @@
 # Generated by roxygen2: do not edit by hand
 
-export(CharacterizationPlots)
-export(InputHandler)
-export(SankeyDiagram)
-export(ShinyModule)
-export(SunburstPlot)
 export(TreatmentPatternsResults)
 export(computePathways)
 export(createSankeyDiagram)
 export(createSunburstPlot)
 export(executeTreatmentPatterns)
 export(export)
 export(getResultsDataModelSpecifications)
-export(launchResultsExplorer)
+export(ggSunburst)
 export(plotEventDuration)
 import(Andromeda)
 import(R6)
 import(checkmate)
 import(dplyr)
 import(ggplot2)
-import(shiny)
-import(shinydashboard)
 import(stringr)
 import(sunburstR)
 import(utils)
 importFrom(dbplyr,window_order)
-importFrom(htmlwidgets,JS)
 importFrom(jsonlite,fromJSON)
 importFrom(jsonlite,toJSON)
 importFrom(networkD3,sankeyNetwork)

NEWS.md

@@ -1,3 +1,10 @@
+# TreatmentPatterns 3.0.1
+---------
+* Deprecated shiny app
+* Removed shiny-related dependencies
+* Added ggplot2 version of sunburst plot
+* Fixed failing examples
+
 # TreatmentPatterns 3.0.0
 ---------
 * Save parameters from `computePathways()` and `export()`