PostgreSQL #115
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| on: | |
| schedule: | |
| - cron: '0 8 * * 6' | |
| push: | |
| branches: [main, rc] | |
| pull_request: | |
| branches: [main, rc] | |
| name: PostgreSQL | |
| jobs: | |
| CDMConnector-PostgreSQL-test: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| STATUS: 0 | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| USER: ${{ secrets.POSTGRESQL_USER }} | |
| PASSWORD: ${{ secrets.POSTGRESQL_PASSWORD }} | |
| HOST: ${{ secrets.POSTGRESQL_HOST }} | |
| DBNAME: ${{ secrets.POSTGRESQL_DBNAME }} | |
| CDM_SCHEMA: ${{ secrets.POSTGRESQL_CDM_SCHEMA }} | |
| RESULT_SCHEMA: ${{ secrets.POSTGRESQL_RESULT_SCHEMA }} | |
| DRIVER_PKG: 'RPostgres' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| extra-repositories: 'https://OHDSI.github.io/drat' | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: '"all"' | |
| - name: Install Driver | |
| run: install.packages("RPostgres") | |
| shell: Rscript {0} | |
| - name: Install TreatmentPatterns | |
| run: R CMD INSTALL --with-keep.source --no-multiarch ./ | |
| - name: Connection Args | |
| run: | | |
| saveRDS( | |
| object = list( | |
| drv = RPostgres::Postgres(), | |
| dbname = Sys.getenv("DBNAME"), | |
| host = Sys.getenv("HOST"), | |
| user = Sys.getenv("USER"), | |
| password = Sys.getenv("PASSWORD") | |
| ), | |
| file = "./args.rds" | |
| ) | |
| shell: Rscript {0} | |
| - name: Run test-database.R | |
| run: | | |
| Rscript -e 'testthat::test_file( | |
| path = "./extras/database_tests/CDMConnector-odbc.R", | |
| reporter = c("summary", "fail"), | |
| package = "TreatmentPatterns" | |
| )' |