Develop #112
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| on: | |
| schedule: | |
| - cron: '0 8 * * 6' | |
| push: | |
| branches: [main, rc] | |
| pull_request: | |
| branches: [main, rc] | |
| name: BigQuery | |
| jobs: | |
| Big-Query-test: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| STATUS: 0 | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| DBMS: 'bigquery' | |
| CONNECTION_STRING: ${{ secrets.BIG_QUERY_CONNECTION_STRING }} | |
| KEY_FILE: ${{ secrets.BIG_QUERY_KEY_FILE}} | |
| CDM_SCHEMA: ${{ secrets.BIG_QUERY_CDM_SCHEMA }} | |
| RESULT_SCHEMA: ${{ secrets.BIG_QUERY_RESULT_SCHEMA }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| extra-repositories: 'https://OHDSI.github.io/drat' | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: '"all"' | |
| - name: Install TreatmentPatterns | |
| run: R CMD INSTALL --with-keep.source --no-multiarch ./ | |
| - name: Setup key-file | |
| run: | | |
| writeLines(Sys.getenv("KEY_FILE"), "key_file.json") | |
| shell: Rscript {0} | |
| - name: Run test-database.R | |
| run: | | |
| Rscript -e 'testthat::test_file( | |
| path = "./extras/database_tests/DatabaseConnector-jdbc.R", | |
| reporter = c("summary", "fail"), | |
| package = "TreatmentPatterns" | |
| )' |