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lab/FPC.html

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<tr><td style='vertical-align: top; text-align: left; padding:15px;'>
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<!---- START BODY -->
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<div style="width:95%; margin-left:15px;">
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<table><tr><td>
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<p><b>Release of FPC has been discontinue as it is obsolete.</b>
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<p>
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Development started at the Sanger Center, UK for the human genome project. This continued work was funded in part by NSF grant
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FPC takes as input a set of clones and their restriction fragments
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and assembles the clones into contigs. It was used in large scale genome sequencing
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projects to find overlapping clones to sequence.
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<td><a href="../img/fpc.gif">
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<img src="../img/fpc.gif" alt="FingerPrinted Contigs" style="border: 1px solid ; width: 245px;"> </a>
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</table>
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<h3>References</h3>
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<p>Nelson, W. and C. Soderlund (2009). Integrating Sequence with FPC Fingerprinted Maps.
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<i>Nucleic Acids Research</i> 1-11 doi:10.1093/nar/gkp034
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<i>Nucleic Acids Research</i> 1-11 doi:10.1093/nar/gkp034
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<p>Nelson, W., J. Dvorak, M. Luo, J. Messing, R. Wing, and C. Soderlund (2006). Efficacy of clone fingerprinting methodologies. Genomics 89:160-165.
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<p>Nelson, W, A Bharti, E Butler, F Wei, G Fuks, H Kim,
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R Wing, J Messing, and C Soderlund (2005).
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Whole-Genome Validation of High-Information-Content Fingerprinting. <i>Plant Physiology</i>
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<b>139</b>:27-38.
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<p> Engler,
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F., J. Hatfield, W. Nelson, and C. Soderlund (2003). Locating sequence
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on FPC maps and selecting a minimal tiling path. <i>Genome Research</i>
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13:2152:2163.
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13:2152:2163.
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<p> Soderlund,
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C., S. Humphrey, A. Dunhum, and L. French (2000). Contigs built
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with fingerprints, markers and FPC V4.7. <i>Genome Research</i>
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10:1772-1787.
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<p> Soderlund,
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C., I. Longden and R. Mott (1997) FPC: a system for building contigs
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from restriction fingerprinted clones. <i>CABIOS</i>, 13: 523-535.
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<p><b>Book chapters</b>
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<p> Nelson, W. and C. Soderlund (2005). Software for restriction fragment physical
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maps. K. Meksem, G. Kahl (ed) The Handbook of Genome Mapping: Genetic
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and Physical Mapping, Wiley-VCH. pp. 285-306.
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<p> Engler,
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F. and C. Soderlund (2002). Software for Physical Maps. In Ian Dunham
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(ed) <i>Genomic Mapping and Sequencing</i>, Horizon Press, Genome
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<i>BioInformatics</i> 18:484-485.
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<p> The International Human Genome Mapping Consortium (2001) A physical
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map of the human genome, <i>Nature</i> 409:934-941.
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map of the human genome, <i>Nature</i> 409:934-941
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</div>

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