pyflow-ChIPseq/cluster.json at master · crazyhottommy/pyflow-ChIPseq · GitHub

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{
    "__default__" :
    {
        "time" : "00:40:00",
        "N" : 1,
        "n": 1,
        "mem": 4000,
        "p" : "shared",
        "name" : "{rule}.{wildcards}",
        "output": "sbatch_log/{rule}.{wildcards}.out",
        "error": "sbatch_log/{rule}.{wildcards}.err"
    },
    "merge_fastqs" :
    {
        "time" : "01:00:00",
        "n" : 1
    },
    "fastqc":
    {
        "time" : "01:00:00",
        "n" : 1
    },
    "align":
    {
        "time" : "05:00:00",
        "mem": 32768,
        "n" : 5
    },
    "sort_bam":
    {
        "time" : "01:00:00",
        "mem": 16384,
        "n" : 5
    },
    "index_bam":
    {
        "time" : "00:20:00"
    },
    "flagstat_bam":
    {
        "time" : "00:30:00"
    },
    "down_sample":
    {
        "time" : "01:00:00",
        "n" : 5,
        "mem": 16384
    },
    "phantom_peak_qual":
    {
        "time": "01:00:00",
	    "n" : 4
    },
    "call_peaks_macs1":
    {
        "time" : "02:30:00"
    },
    "call_peaks_macs2":
    {
        "time" : "02:00:00"
    },
    "make_bigwigs":
    {
        "time" : "03:00:00",
        "mem": 16384,
        "n" : 5
    },
    "make_inputSubtract_bigwigs":
    {
        "time" : "03:00:00",
        "mem": 16384,
        "n" : 5
    },
    "multiQC" :
    {
        "time" : "00:30:00"
    },
    "bam2bed" :
    {
        "time": "01:00:00"
    },
    "make_table":
    {
        "time": "00:10:00"
    },
    "chromHmm_binarize":
    {
        "time": "04:00:00"
    },
    "chromHmm_learn":
    {
        "time": "24:00:00",
        "n": 10,
        "mem": 32768
    },
    "superEnhancer":
    {
        "time": "8:00:00",
        "cpu": 4,
        "mem" : 32768
    }
}