MD5

044c1294cab6f1fa661d8dca83f302b6 *ChangeLog
7ef0bbdb6097aba44839cedb56a8b474 *DESCRIPTION
e56e0d459ff5cf6849aa20881c79bf0a *LICENSE
f47f171258d37858064cb460710ce893 *NAMESPACE
c7f735747447c989c5abec27f25dd8e6 *R/genMakefile.R
f453b2311314ffac0af627bfffc30109 *R/seqminer.R
94dace7c49f4b879d238b5f48bf60893 *README.md
0e3def53fcb144f646aa72ce734d388d *cleanup
ff7b61605cef334c5bbd7cbc466d9013 *configure
60ab71a6ef4de471df3c059adcff4f64 *configure.ac
d41d8cd98f00b204e9800998ecf8427e *configure.win
a7aa8e76f7e4646af6b644cdf37f2cb7 *demo/00Index
34ab676ae0614287c6170163dbcc0c44 *demo/annotate.R
80afcb0fa924316b839b3d56655d05fe *demo/meta.workflow.R
076b6535f57410f9475402c8748869cf *demo/vcf.workflow.R
14c1058b2d6d010c568d15f5570b5166 *inst/CITATION
df07ff391104874a068fcebeba818c2b *inst/benchmark/output.png
172c0f6fefb190a6621d83626879d8df *inst/benchmark/seqminer2_benchmark_script.txt
0fc479584e48a4ae306ba1121fa429ed *inst/bgen/all.anno.filtered.extract.bgen
be4d632ee62142e3fceacf0a5c5e7f2d *inst/bgen/all.anno.filtered.extract.bgen.bgi
9ebec06f2cb97dcef8b5ada47369469a *inst/plink/all.anno.filtered.extract.bed
0190a64ccb403c31bad91f3ee2e3c833 *inst/plink/all.anno.filtered.extract.bim
614a24fccf790641566a70999938ee64 *inst/plink/all.anno.filtered.extract.fam
751c636c82b643e5a9498591b5218032 *inst/rvtests/cfh.refFlat.txt
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e3b70c9d450ffc3505f6b60025605363 *inst/tabanno/codon.txt
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cddf8f9094beb0f87332bee2abb860b8 *inst/tabanno/input.test.plain.txt
5da124f1fde1b084dafcf5a870f46b1e *inst/tabanno/input.test.vcf
7e51a21043ce478b9cd506e0b8162697 *inst/tabanno/priority.epact.txt
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54932744e3eed15da9808ea28475cc98 *inst/tabanno/test.fa.fai
ed581f9cebe1457335b2fd0463f88f58 *inst/tabanno/test.gene.txt
1da7da33635f876f5633bee3f0225ed9 *inst/tabanno/tmp.vcf
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03b777e22fde02a18b2f523ff327e2f2 *inst/tests/correct.Rdata
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30b34178034c34db61e46eeaf01fe863 *inst/vcf/all.anno.filtered.extract.bcf.gz
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a30627f5fed64983816d94ff2f90369c *inst/vcf/all.anno.filtered.extract.vcf.gz
52e0fe3425c2c050045193e14a360262 *inst/vcf/all.anno.filtered.extract.vcf.gz.scIdx
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9cc4f5122bb2e3b0b6b519f8c00d4fd7 *inst/vcf/refFlat_hg19_6col.txt.gz
bcaa86a548b7bfa57be368e6b2a771c0 *man/SEQMINER.Rd
87ab257265a80966e387a6148917e86c *man/addJob.Rd
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107af8d451f3c894df6919531cf14a30 *man/annotatePlain.Rd
7c3372211f3e8ea1c9cc0d767805400f *man/annotateVcf.Rd
0aae9a5325423af1afa9d970ecebd5fc *man/createSingleChromosomeBCFIndex.Rd
4de3607c0e2c003beb99af728af933c6 *man/createSingleChromosomeVCFIndex.Rd
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3409d7f17fc0dbb1ce20ad0f1f76fb2a *man/hasIndex.Rd
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9f7c7e0a547d4c048eb93ab7f0fed609 *man/newJob.Rd
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a1e8fb308374f2fb89613b0bf8b79834 *man/readBGENToListByRange.Rd
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867390832e59803b056cdc9de37e2afc *man/readBGENToMatrixByRange.Rd
649461b2d557c57795a9d562a2a9b656 *man/readPlinkToMatrixByIndex.Rd
80aaaf1c5c9e747436f549ba7c58f0dc *man/readSingleChromosomeBCFToMatrixByRange.Rd
9f556896bf800d96803d860076edab49 *man/readSingleChromosomeVCFToMatrixByRange.Rd
5254d00423c1faca7121cb57ab61b0fa *man/readVCFToListByGene.Rd
6f6e75ece7a0f85ecc6c9eec5ddad37e *man/readVCFToListByRange.Rd
059216918e4401139745d168101b9217 *man/readVCFToMatrixByGene.Rd
81dbd9167f0fd5977a05ccfe6b76e85b *man/readVCFToMatrixByRange.Rd
bb4d59bdf94e6bd1081a2da069b911c2 *man/rvmeta.readCovByRange.Rd
ead10883f1c9d5b29385a9186733d143 *man/rvmeta.readDataByGene.Rd
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aad15da19391b8c2279c020e93d70691 *man/rvmeta.readNullModel.Rd
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46ba752f57a34930dab3d612b8222964 *man/rvmeta.readSkewByRange.Rd
44b5eee3a76342bc100214bd5d6958c3 *man/rvmeta.writeCovData.Rd
2c25fe2f18970054a0bfe685443a5841 *man/rvmeta.writeScoreData.Rd
f7af656fe0c02797f72ec1914713d97d *man/sub-.PlinkFile.Rd
2e3223a4829ef2bf2efff0fca9e8ec93 *man/tabix.createIndex.Rd
14360d934187e7a519081b850fdbe654 *man/tabix.createIndex.meta.Rd
0e73bbdaeb5c30d5c809e2daa4b8fe88 *man/tabix.createIndex.vcf.Rd
94df4652e46e8e6a5edefe715ebc6091 *man/tabix.read.Rd
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0693e8785d06eb73dfc61bd3e83fc467 *man/tabix.read.table.Rd
39669760127c150e20c3e3a93e6789d5 *man/validateAnnotationParameter.Rd
11503cc8b76406b5ecfa915ab65ca57d *man/verifyFilename.Rd
71049753aa7f220312508a092bdb5720 *man/writeWorkflow.Rd
7d5d1a014c9780ae010fa734625636ff *src/AnnotationController.h
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46da1d3bf4101788cfe57d697b9fc8cf *src/FileIO.h
5c9aa66706b4e5f8ca10f9edd877ae0d *src/FreqTable.h
4131ba5a2da46794ab3507390f46af9f *src/Gene.h
ea40b371329fb429318a1efa04feb75d *src/GeneAnnotation.h
222b54973e8c0f6de708737c566e73c9 *src/GeneFormat.h
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1b4531d5ac23a84ba35bee5612ab5355 *src/bcfutils.c
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7f00b566caf546743a0fdb462faeb41c *src/bgen2genoLoader.cpp
4451c8c959a22197ab55c181b7faba44 *src/bgen2genoLoader.h
1a70b01885a5be961c7a6d54e4ed2c3c *src/bgzf.c
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d8eb17ba4c89a4a9337986e12ecfd50c *src/khash.h
42a41dedcca1491577474ab5492eaf7c *src/knetfile.c
9f249d8b98f08def9891a21cab0514c0 *src/knetfile.h
89e7b91e8dd04627d7ed7833322e8ce9 *src/kseq.h
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6b1b42bbbbe56cdd2bdec966f4fbc3e7 *src/kstring.c
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4efa9da2a1fb7a53a5d33c4b8fda524f *src/plink2genoLoader.cpp
1705f53f13f9969916df3ef711843b93 *src/plink2genoLoader.h
3061c051a89d9cb9a69be246295ba2f9 *src/rvMetaLoader.cpp
3e282c8377c668d4e6add53c051f8610 *src/rvMetaLoader.h
1bc15372aae8714e74c6505de9c2aa2d *src/scbcf2genoLoader.cpp
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c963aa9881e9ccff6011a34efe5f30d2 *src/scvcf2genoLoader.h
12c2f4a8e55a83d998db139f533dca63 *src/seqForStat.c
8fb708242424e26d260794c7d2d3f1be *src/seqminer.c
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