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for(int i = 22; i>0; --i){ |
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ldfile = gsubstr(ldfile, "chr" + to_string(i), "chr*"); |
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} |
Currently the LD References are restricted to chromsomes 1 - 22 and does not include the ability to provide X, Y or MT chromosomes. This would be a really handy feature to have when generating and providing alternative LD reference datasets, inclusive of other populations. Linked to #1 for limitations in LD reference data to use.
GAMBIT/src/Main.cpp
Lines 196 to 198 in 1644b80
Currently the LD References are restricted to chromsomes 1 - 22 and does not include the ability to provide X, Y or MT chromosomes. This would be a really handy feature to have when generating and providing alternative LD reference datasets, inclusive of other populations. Linked to #1 for limitations in LD reference data to use.